Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1792 ATGCCGGACTTCAACTACGACAATCCTTCGCAGGATCTCTCCGCCGACTCGCTGCCGGAGGGAATTCTCTTCGGGAAATACGAGCTCGGCAAGCTGTTGGGCTGTGGAGCCTTCGCGAAGGTCTACCATGGCAGAAACCTCCTCACGGGACAGAGCGTCGCGATCAAGGCCGTCAACAAGCTCAAGGTCCTCAAAGGCGGTTTCACGGCGCACGTCAAGAGAGAGATCGCTATCATGCGCCGCCTCCGCCATCCCAACGTCGTTCGTCTCTTCGAAGTTCTCGCCACCAAGACGAAGATTTATTTCGTAATGGAGTTCGCCAAGGGAGGGGAGCTCTTCGCCAAGGTTTCCAAGGGGAGGTTCAGTGAGAATCTCAGCCGTCGGTACTTCCAGCAGCTGATTACCGCCGTCGGATACTGTCATTCCAGAGGGATTTTTCATCGTGATTTGAAGCCGGAGAATCTCCTTCTCGACGACAATTTCGATCTCAGAGTTTCGGATTTCGGACTCAGCGCTTTGACCGATCAGATTCGTCCCGACGGATTGCTCCACACGCTCTGCGGCACTCCGGCCTACGTCGCGCCGGAGATTCTCGCCAAGAAAGGCTACGACGGGGCTAAGATCGACGTCTGGTCCTGCGGGATAATCCTCTACGTTCTCACCGCCGGTTATCTTCCCTTTAACGACTCGAATTTAATGGCCATGTATAGGAAGATTTACAGAGGCGATTTCCGGTGCCCTAAGTGGACGTCGCCGGATCTGCGGCGGTTTCTGTCCAGGCTTTTGGACACGAATCCCGAGACGAGGATCACCGTCGACGAGATTCATCAGGATCCGTGGTTCAGAAAGGGGTTTCAGGAGGAGAAGCTTCAATTCGAAGATTCCGCTTCGGAGCTTTACGGCGAGGTGAACAATGCGAAGTATTTGAATGCTTTCGATCTTATTTCGTTCTCACCTGGCTTCGATTTGACTGGATTGATCAACGAGACGGAGTTTTCGTCCGGCGTTGAGAGATTCCTCTCCGCCGAGTCGCCGGAGAAGATCATTGTGACGGTTGAGGAGGTTTCGAAGTCGGAAAATGCGGCGGTGGAGAAGAACGGCTGGGGAGCTAAAGTGGAGGGCCACGACGGCGGTTTCGTCGCCGTTATTGATATTTTTCGGCTGACGGAGGAATTGGTGGTGGTCGAGATCAAAAACAGAGTGAGGGAAACGGATATAGATCGTCAAATTTGGAAAGATAAACTGAGACCTCAACTCAATTGTTTAATCTACCGGTCGGACGGATAA 1287 53.07 MPDFNYDNPSQDLSADSLPEGILFGKYELGKLLGCGAFAKVYHGRNLLTGQSVAIKAVNKLKVLKGGFTAHVKREIAIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFAKVSKGRFSENLSRRYFQQLITAVGYCHSRGIFHRDLKPENLLLDDNFDLRVSDFGLSALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTAGYLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIHQDPWFRKGFQEEKLQFEDSASELYGEVNNAKYLNAFDLISFSPGFDLTGLINETEFSSGVERFLSAESPEKIIVTVEEVSKSENAAVEKNGWGAKVEGHDGGFVAVIDIFRLTEELVVVEIKNRVRETDIDRQIWKDKLRPQLNCLIYRSDG 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39464360 39465646 + Lag0012284.1 Lac1g1792 595363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1792 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1792 428 SUPERFAMILY Protein kinase-like (PK-like) 23 292 IPR011009 -
Lac1g1792 428 Gene3D Kinase associated domain 1, KA1 305 425 - -
Lac1g1792 428 FunFam Non-specific serine/threonine protein kinase 19 305 - -
Lac1g1792 428 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165(InterPro)
Lac1g1792 428 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524(InterPro)
Lac1g1792 428 CDD CIPK_C 310 420 - -
Lac1g1792 428 FunFam Aurora kinase A 21 110 - -
Lac1g1792 428 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Lac1g1792 428 ProSiteProfiles Protein kinase domain profile. 27 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1792 428 Gene3D Phosphorylase Kinase; domain 1 20 106 - -
Lac1g1792 428 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 18 405 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac1g1792 428 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1792 428 SMART serkin_6 27 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1792 428 Pfam NAF domain 307 365 IPR004041 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1792 Lac-Chr1:39464360 Lac9g2336 Lac-Chr9:42677221 5.00E-150 dispersed
Lac1g1792 Lac-Chr1:39464360 Lac1g1796 Lac-Chr1:39560526 1.20E-116 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85895 PF00069 Pkinase 2.80E-70 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1792 - - - 0.0