Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1796 ATGGAGAACAAAGGGGCTGTCTTGATGCAACGTTATGAATTAGGAAGGCTGTTGGGGCAGGGAACCTTTGCCAAGGTTTACCATGCTAGAGACGTTAAAACTGGCGTGAGTGTGGCTATTAAAGTTATTGACAAAGAGAAGATCTTGAAGGTTGGGATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGACTAATTAAGCATCCCAACGTTGTTGAGCTTTATGAGGTTATGGCAAGCAAAACCAAAATTTACTTTGTCATGGAATATGTCAAAGGCGGTGAGCTATTCAATAAAGTATCCAAAGGAAAGCTTAAAGAAGCTGTTGCGCGAAAATACTTTTGGCAGCTGATCAGTGCTGTGGATTATTGCCACAGTAGAGGGGTATGCCATCGAGATTTGAAACCAGAAAATTTACTATTGGATGAACATGGTAATCTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCTGAATCTAAGCGCCAAGATGGATTGCTCCATACTACCTGTGGGACACCTGCTTACGTTGCTCCAGAAGTCATTAACAGGAGAGGTTATGATGGATACAAAGCTGATATTTGGTCGTGTGGAGTAATCTTATTCGTTCTGTTGGCTGGTTATCTCCCATTCCACGACTCAAATCTAATGGAGATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTACACCAGAGGTGCGCAAGCTATTGTCGAAGATTTTGGATCCAAACCCAAATACCAGGATATCTATCGCCAAAATAATGACAAGTTCTTGGTTAAGGAGGGGCTTGAACGTGAAACCCCAAATTAATGCAGAAGAAGTTAAAGAAGGTGCTCCTTTGGACGTTGATGCAGTTTTTGTGTCTACAATCGAGGACCGAGATTCTGTTAGAGGGCTGAAGCAAGAAGTGGAGAAGCCATTGAATTTGAACGCTTTCGACATAATCTCCTTGTCAGCAGGTTTCGATTTGTCAGGATTATTCGAGGAGACTGATCAAAAGAAAGAAGTAAGATTCACATCGAACAAGCCTGCATCCACCATCATCTCGAAACTGCAAGACATTGCAAAGTGCTTGAAGTTGAAAATCAAGAAGAAAGACAGAGGCCTGTTGAAGATCGAAGGGTGTAAGGAAGGTCGTAAAGGAGCCGTATGTATCGACGCCGAGATTTTCGAGGTCACCCCATCATTCCATATAGTGGAAATGAAGAAATCAAATGGAGATACACTGGAATATCATAAAATTATGAAGGACGATATAAGACCCGCCCTGAAGGACATCATCTGGACCTGGCAAGGCGAGCAGCAACAGCTATCACAAGCCGAACAACAAGAAGCGTAA 1359 42.31 MENKGAVLMQRYELGRLLGQGTFAKVYHARDVKTGVSVAIKVIDKEKILKVGMIDQIKREISVMRLIKHPNVVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKEAVARKYFWQLISAVDYCHSRGVCHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGYKADIWSCGVILFVLLAGYLPFHDSNLMEMYKKIGKGEFKFPNWFTPEVRKLLSKILDPNPNTRISIAKIMTSSWLRRGLNVKPQINAEEVKEGAPLDVDAVFVSTIEDRDSVRGLKQEVEKPLNLNAFDIISLSAGFDLSGLFEETDQKKEVRFTSNKPASTIISKLQDIAKCLKLKIKKKDRGLLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTLEYHKIMKDDIRPALKDIIWTWQGEQQQLSQAEQQEA 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39560526 39561884 - Lag0012288.1 Lac1g1796 595367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1796 452 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1796 452 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 424 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac1g1796 452 Gene3D Transferase(Phosphotransferase) domain 1 4 318 - -
Lac1g1796 452 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1796 452 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
Lac1g1796 452 FunFam Non-specific serine/threonine protein kinase 2 288 - -
Lac1g1796 452 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1796 452 CDD CIPK_C 317 431 - -
Lac1g1796 452 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Lac1g1796 452 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Lac1g1796 452 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Lac1g1796 452 Pfam NAF domain 313 371 IPR004041 GO:0007165(InterPro)
Lac1g1796 452 Gene3D Kinase associated domain 1, KA1 319 436 - -
Lac1g1796 452 FunFam Non-specific serine/threonine protein kinase 311 435 - -
Lac1g1796 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1796 452 CDD STKc_SnRK3 11 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0961 Lac-Chr10:7689394 Lac1g1796 Lac-Chr1:39560526 4.40E-168 dispersed
Lac12g2230 Lac-Chr12:39495079 Lac1g1796 Lac-Chr1:39560526 4.90E-105 dispersed
Lac1g1796 Lac-Chr1:39560526 Lac9g2337 Lac-Chr9:42681407 9.50E-176 dispersed
Lac9g2574 Lac-Chr9:44336473 Lac1g1796 Lac-Chr1:39560526 1.10E-37 dispersed
Lac1g1792 Lac-Chr1:39464360 Lac1g1796 Lac-Chr1:39560526 1.20E-116 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85896 PF00069 Pkinase 4.40E-77 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1796 K07198 - csv:101209068 800.431