Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1832 ATGGCCACAAGCGTCTCCCACTCTCCCGATTTCCGCCCCGAAATCTCAGTTTCGCCACCGACCCACGACGGCCTTTTCTTCTGGCAGTTCATGATCGCCGGATCAATAGCAGGGTCCGTCGAGCACATGGCCATGTTTCCAGTGGACACTCTCAAGACCCGAATACAAGCCCTCGGCGGATCATCTACAGTCCGACAAGCACTCGGGTCGATTCTGAAAGTGGAAGGTCCGGCCGGACTCTACCGTGGAATCGGAGCAATGGGTCTGGGCGCAGGGCCTGCACACGCTGTATACTTCTCGGTATACGAATTCTGCAAAGAGGGGTTTTCGATTGGAAATCCGAACAACCCATTAGGGCACGCCATTTCTGGAGTGTGTGCGACGGTGGCGAGCGACGCCGTGATAACGCCGATGGATGTGGTGAAACAGAGGCTGCAGTTGGAGAGCAGTCCTTATAAGGGAGTGGGGGACTGTGTGAGGAGGGTTTTGGTTGAGGAAGGAATTGGGGCGCTCTATGCTTCCTATCGGACCACGGTTTTGATGAATGCGCCGTACACGGCTGTCCATTTTGCCACTTATGAAGCTGCGAAAAGGGGCTTGAAGGAAGTCTCGCCGGGAAGTGACGACGATGAGGGGTTGGTTGTTCATGCTACGGCCGGTGCGGCAGCTGGGTCTATTGCTGCTGCTCTTACAACGCCATTAGACGTTGTGAAAACTCGGCTGCAATGCCAGGGAGTGTGTGGGTGCGACAGATTTTCAAGCAGTTCGATAGGATACGTACTTGGGCATGTGGTGAAGAAGGATGGGTACAATGGCCTGATGAGAGGATGGCTCCCAAGGATGCTGTTCCATGCGCCTGCTGCTGCAATTTGCTGGTCCACTTACGAAGCTTCAAAAACCTTCTTTCAACAGCTCCACCACGACAACAATTAG 933 54.34 MATSVSHSPDFRPEISVSPPTHDGLFFWQFMIAGSIAGSVEHMAMFPVDTLKTRIQALGGSSTVRQALGSILKVEGPAGLYRGIGAMGLGAGPAHAVYFSVYEFCKEGFSIGNPNNPLGHAISGVCATVASDAVITPMDVVKQRLQLESSPYKGVGDCVRRVLVEEGIGALYASYRTTVLMNAPYTAVHFATYEAAKRGLKEVSPGSDDDEGLVVHATAGAAAGSIAAALTTPLDVVKTRLQCQGVCGCDRFSSSSIGYVLGHVVKKDGYNGLMRGWLPRMLFHAPAAAICWSTYEASKTFFQQLHHDNN 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 40016443 40018173 - Lag0012324.1 Lac1g1832 595403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1832 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 25 108 IPR018108 -
Lac1g1832 310 Pfam Mitochondrial carrier protein 26 109 IPR018108 -
Lac1g1832 310 Pfam Mitochondrial carrier protein 212 304 IPR018108 -
Lac1g1832 310 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
Lac1g1832 310 PRINTS Mitochondrial carrier protein signature 130 148 IPR002067 GO:0055085(InterPro)
Lac1g1832 310 PRINTS Mitochondrial carrier protein signature 172 190 IPR002067 GO:0055085(InterPro)
Lac1g1832 310 PRINTS Mitochondrial carrier protein signature 30 43 IPR002067 GO:0055085(InterPro)
Lac1g1832 310 PRINTS Mitochondrial carrier protein signature 220 242 IPR002067 GO:0055085(InterPro)
Lac1g1832 310 PRINTS Mitochondrial carrier protein signature 43 57 IPR002067 GO:0055085(InterPro)
Lac1g1832 310 FunFam Mitochondrial RNA-splicing protein MRS3 150 310 - -
Lac1g1832 310 Gene3D Mitochondrial carrier domain 110 310 IPR023395 -
Lac1g1832 310 PANTHER MITOFERRIN-1-RELATED 18 304 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Lac1g1832 310 SUPERFAMILY Mitochondrial carrier 25 296 IPR023395 -
Lac1g1832 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 301 IPR018108 -
Lac1g1832 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 115 199 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1832 Lac-Chr1:40016443 Lac9g2357 Lac-Chr9:42820589 4.10E-130 dispersed
Lac1g1832 Lac-Chr1:40016443 Lac4g3001 Lac-Chr4:48277704 1.00E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1832 K15113 - csv:101210464 565.074