Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1873 ATGGCTTCCCAAACCGAGCCTTGGCTACTGGAAAACGGAACCGTGAAGCGCTTGACCAAAGACAATCGACAAGGCCATGGCCGGAGCCGAACCGCCCACAACATGTCCTCCTCTTCCCTCCGCAAAAAGTCCGATTTAACCCTCGTCTCCAAAATCCCCATCGGCTGCCTCAGGAGCTTCTTCATCAATCTCCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCCGCGATTCCTCTCGCTATTGTCGCTGACTGTTTTGGCTTTGCAAGACCTTGGATTTTTGCATTGAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTTCTGACTGAGCAAATCGCTTATTTCACTGGTCCAACAGTTGGGGGACTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCACTTACACGAGGAAAGATAGACGTTGTCAAGTATTCTCTTTTGGGTTCTGTTCTTTCAAACCTTCTTCTGGTTCTTGGAACCTCTCTATTCTGTGGTGGCATTGCAAATCTTAGAAGGGAGCAGAATTATGACAGGAGGCAAGCTGATGTCAACGCACTGATGCTGATGCTGTCATTACTGTGCCACTTGTTGCCGTTATTATTTGGCTACGCCGCCTCCTCCGCCACCACCGCCGCCACCTCCACCCTCCACCTGTCCAGAGCCAGCAGCATCGTAATGCTCTCCGCTTACATTGCTTACCTCGTCTTCCAACTCTGGACTCACCGGCAATTATTTGAAGCCGAGGATTCTGATGAAGACGACGACGTTCCCGGAGAAGAGGCAGTGATTGGATTCTGGAGTGCATTTGCATGGCTTGTAGGAATGACACTTGTCATTGCTTTGCTGTCCGAATACGTTGTGAACACAATTGAGGAAGCATCAACTACTTGGGGTCTGTCAGTGAGTTTCCTTAGCATAATCTTGCTCCCTATAGTCGGAAATGCAGCCGAACACGCGGGAGCTATCATATTTGCTTTTAAGAATAAGTTGGACATTTCTTTGGGGGTTGCTTTGGGATCGGCAACACAAATTGCACTCTTTGTGATTCCACTGTGTGTGATCGTTGCTTGGACAATGGGAGTGGACATGGACCTGAATTTCAATCTCATGGAAACGGGGTCGCTTGGATTGGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTACATTAAAGGCCTTGTTCTTCTTCTATGCTACATTATCATTGCTGCTTGCTTCTTTGTCTCCAATACAATAGAAGATGATAACAAAGCCCCCAACTTGACAATCCAATCATCAAACCAAGCAATCTTCAGAGCTTAA 1353 47.38 MASQTEPWLLENGTVKRLTKDNRQGHGRSRTAHNMSSSSLRKKSDLTLVSKIPIGCLRSFFINLQEVILGTKLSILFPAIPLAIVADCFGFARPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTRGKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRREQNYDRRQADVNALMLMLSLLCHLLPLLFGYAASSATTAATSTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEDSDEDDDVPGEEAVIGFWSAFAWLVGMTLVIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSNTIEDDNKAPNLTIQSSNQAIFRA 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 40454437 40459615 + Lag0012365.1 Lac1g1873 595444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1873 450 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 22 427 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Lac1g1873 450 FunFam Vacuolar cation/proton exchanger 269 425 - -
Lac1g1873 450 Gene3D - 272 425 IPR044880 -
Lac1g1873 450 Gene3D - 124 265 IPR044880 -
Lac1g1873 450 Pfam Sodium/calcium exchanger protein 281 424 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g1873 450 Pfam Sodium/calcium exchanger protein 95 252 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g1873 450 NCBIfam calcium/proton exchanger 78 424 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Lac1g1873 450 FunFam Vacuolar cation/proton exchanger 124 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3212 Lac-Chr10:46235772 Lac1g1873 Lac-Chr1:40454437 1.20E-164 dispersed
Lac1g1873 Lac-Chr1:40454437 Lac5g0759 Lac-Chr5:9927454 1.30E-95 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1873 K07300 - csv:101213857 763.837