Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g1873 | ATGGCTTCCCAAACCGAGCCTTGGCTACTGGAAAACGGAACCGTGAAGCGCTTGACCAAAGACAATCGACAAGGCCATGGCCGGAGCCGAACCGCCCACAACATGTCCTCCTCTTCCCTCCGCAAAAAGTCCGATTTAACCCTCGTCTCCAAAATCCCCATCGGCTGCCTCAGGAGCTTCTTCATCAATCTCCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCCGCGATTCCTCTCGCTATTGTCGCTGACTGTTTTGGCTTTGCAAGACCTTGGATTTTTGCATTGAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTTCTGACTGAGCAAATCGCTTATTTCACTGGTCCAACAGTTGGGGGACTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCACTTACACGAGGAAAGATAGACGTTGTCAAGTATTCTCTTTTGGGTTCTGTTCTTTCAAACCTTCTTCTGGTTCTTGGAACCTCTCTATTCTGTGGTGGCATTGCAAATCTTAGAAGGGAGCAGAATTATGACAGGAGGCAAGCTGATGTCAACGCACTGATGCTGATGCTGTCATTACTGTGCCACTTGTTGCCGTTATTATTTGGCTACGCCGCCTCCTCCGCCACCACCGCCGCCACCTCCACCCTCCACCTGTCCAGAGCCAGCAGCATCGTAATGCTCTCCGCTTACATTGCTTACCTCGTCTTCCAACTCTGGACTCACCGGCAATTATTTGAAGCCGAGGATTCTGATGAAGACGACGACGTTCCCGGAGAAGAGGCAGTGATTGGATTCTGGAGTGCATTTGCATGGCTTGTAGGAATGACACTTGTCATTGCTTTGCTGTCCGAATACGTTGTGAACACAATTGAGGAAGCATCAACTACTTGGGGTCTGTCAGTGAGTTTCCTTAGCATAATCTTGCTCCCTATAGTCGGAAATGCAGCCGAACACGCGGGAGCTATCATATTTGCTTTTAAGAATAAGTTGGACATTTCTTTGGGGGTTGCTTTGGGATCGGCAACACAAATTGCACTCTTTGTGATTCCACTGTGTGTGATCGTTGCTTGGACAATGGGAGTGGACATGGACCTGAATTTCAATCTCATGGAAACGGGGTCGCTTGGATTGGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTACATTAAAGGCCTTGTTCTTCTTCTATGCTACATTATCATTGCTGCTTGCTTCTTTGTCTCCAATACAATAGAAGATGATAACAAAGCCCCCAACTTGACAATCCAATCATCAAACCAAGCAATCTTCAGAGCTTAA | 1353 | 47.38 | MASQTEPWLLENGTVKRLTKDNRQGHGRSRTAHNMSSSSLRKKSDLTLVSKIPIGCLRSFFINLQEVILGTKLSILFPAIPLAIVADCFGFARPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTRGKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRREQNYDRRQADVNALMLMLSLLCHLLPLLFGYAASSATTAATSTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEDSDEDDDVPGEEAVIGFWSAFAWLVGMTLVIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSNTIEDDNKAPNLTIQSSNQAIFRA | 450 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 40454437 | 40459615 | + | Lag0012365.1 | Lac1g1873 | 595444 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g1873 | 450 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 22 | 427 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
Lac1g1873 | 450 | FunFam | Vacuolar cation/proton exchanger | 269 | 425 | - | - | |
Lac1g1873 | 450 | Gene3D | - | 272 | 425 | IPR044880 | - | |
Lac1g1873 | 450 | Gene3D | - | 124 | 265 | IPR044880 | - | |
Lac1g1873 | 450 | Pfam | Sodium/calcium exchanger protein | 281 | 424 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac1g1873 | 450 | Pfam | Sodium/calcium exchanger protein | 95 | 252 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac1g1873 | 450 | NCBIfam | calcium/proton exchanger | 78 | 424 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
Lac1g1873 | 450 | FunFam | Vacuolar cation/proton exchanger | 124 | 268 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g3212 | Lac-Chr10:46235772 | Lac1g1873 | Lac-Chr1:40454437 | 1.20E-164 | dispersed | |
Lac1g1873 | Lac-Chr1:40454437 | Lac5g0759 | Lac-Chr5:9927454 | 1.30E-95 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g1873 | K07300 | - | csv:101213857 | 763.837 |