Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1888 ATGGATTCGTCTCACAATCCAACGGACACAAAACCACCACCACAGATTATGTGGCAATCGCCGATCACAATTCCCCTTTCTGAGCCACATAATAACCCAACCAAAATCCCCAATTCCATCACACACTCACCCTTTCCCCCCCTCTCAACTCGCCGCGAAATTCTCGCCGTCGTAATGGCCGCCACCGCCACCGCCGCCGCAACCTCCTCCTTCATCGGAACGCGCCTCGCCGACGTTCGGCCGAGTTCCGGGCGAGTCCAAGCCCGATTCTCATTCGGCAAAAAGAAGAGCCCGGCGAAGAAATCGCCGTCGTCGAAGCAGATATCAGACCGGCCGCTGTGGTTCCCCGGAGCGAAGGCGCCGGAATGGCTGGACGGAAGCCTGGTGGGCGACTACGGGTTCGATCCGTTCGGGTTGGGGAAACCGGCGGAGTATTTGCAGTACGATCTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCCGGAGATATAATCGGAACGAGATTCGAGAGCTCGGAAGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTTGGATTGCAGAGATTCCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCCATGTTGGCCACACTCGGTGCTCTCTCTGTTGAGTGGCTCACTGGCGTCACTTGGCAAGACGCCGGAAAGGTAGAATTAGTGGAAGGTTCATCCTACCTTGGGCAGCCCCTTCCTTTCTCCATCACCACATTGATCTGGATCGAAGTTCTCGTGATCGGATACATCGAGTTTCAAAGGAACTCCGAGCTCGACCCCGAGAAGAGATTGTATCCCGGAGGCAAGTATTTTGACCCCTTAGGCTTGGCCGAGGATCCCGAAAAGAAAGCCATCCTACAATTGGCCGAGATCAAGCATGCTCGCCTTGCCATGGTTGCCTTCCTTGGCTTCGCTGTTCAAGCTGCTGTCACTGGCAAAGGCCCGCTCAACAATTGGGCAACCCATCTGAGTGACCCACTCCACACCACCATTATTGACACGTTCTCCTCTTCTTAA 1041 55.24 MDSSHNPTDTKPPPQIMWQSPITIPLSEPHNNPTKIPNSITHSPFPPLSTRREILAVVMAATATAAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 40570178 40572409 - Lag0012380.1 Lac1g1888 595459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1888 346 Gene3D Chlorophyll a/b binding protein domain 114 346 - -
Lac1g1888 346 FunFam Chlorophyll a-b binding protein, chloroplastic 168 345 - -
Lac1g1888 346 MobiDBLite consensus disorder prediction 1 45 - -
Lac1g1888 346 SUPERFAMILY Chlorophyll a-b binding protein 107 344 - -
Lac1g1888 346 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 64 340 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lac1g1888 346 Pfam Chlorophyll A-B binding protein 120 316 IPR022796 -
Lac1g1888 346 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1888 Lac-Chr1:40570178 Lac8g2422 Lac-Chr8:42322227 4.40E-40 dispersed
Lac1g1888 Lac-Chr1:40570178 Lac10g3209 Lac-Chr10:46217220 8.10E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1888 K08915 - csv:101208740 546.969