Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1919 ATGGCGGCTTTGGAAACTGCCGGAGTTGATTTGGAGGAAGGTGACCGTGGCGGCGGTGGTCGGCGGGCGGAGGCTGGAAGTGGGGTTGGTGAAGTGAAGGTGCATTTGGAGAGGGATTGTAGGATTTGCCATTTGGGTTTGGAGAGCAATAGCAGTGAGTGTGGGATTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGTCATTCTGTTGTACAAAATGTCATCGGAGGACATGAACTAGAACCAATGGAGCAACTCCATGAGTCGAACAACGGGACGGTATCGACAGCCACGGTTGCAGCATCGGTGGCTGCCGCTCCCGGGGGTGGCCGGAGCTTTTGGCAGGTTCACCGGGTGCTGAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTGTTTCATTTCAATGTGCCATCATAG 504 50.6 MAALETAGVDLEEGDRGGGGRRAEAGSGVGEVKVHLERDCRICHLGLESNSSECGIAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVQNVIGGHELEPMEQLHESNNGTVSTATVAASVAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 40874212 40875220 + Lag0012411.1 Lac1g1919 595490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1919 167 MobiDBLite consensus disorder prediction 1 26 - -
Lac1g1919 167 ProSiteProfiles Zinc finger RING-CH-type profile. 32 98 IPR011016 GO:0008270(InterPro)
Lac1g1919 167 SUPERFAMILY RING/U-box 37 95 - -
Lac1g1919 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 100 IPR013083 -
Lac1g1919 167 PANTHER ZINC FINGER, RING-CH-TYPE 25 166 - -
Lac1g1919 167 SMART ringv_2 39 92 IPR011016 GO:0008270(InterPro)
Lac1g1919 167 Pfam RING-variant domain 40 91 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g0723 Lac-Chr1:17948921 Lac1g1919 Lac-Chr1:40874212 3.40E-07 dispersed
Lac1g1919 Lac-Chr1:40874212 Lac7g2790 Lac-Chr7:47030481 3.40E-30 dispersed
Lac1g1919 Lac-Chr1:40874212 Lac10g3167 Lac-Chr10:45883863 9.90E-46 wgd
Lac1g1919 Lac-Chr1:40874212 Lac8g2911 Lac-Chr8:46234570 1.40E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1919 - - - 0.0