Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1943 ATGGCAGCTGAACAAGTGCAGGTCTTTGGTTTTCGGTCAGGACCCTTCAGTCTGAGAGTGGAGTTGGCTCTCAGGCTCAAAGGCGTAGCTTACGAACACATCGAGGAAGATTTGCTAAACAAGAAGAGCGATTTGCTTCTGAAATACAACCCAATCTACAAGAAGGTGCCTGTCCTCGTCCACCATGGCAAACCCATTTCAGAGTCTCTCGTCATCCTCGAATACATCGAAGAAACTTGGAGAGACAACCCCATCTTCCCCCAACATCCCCATGAGAAAGCTCTTGCCAGGTTTTGGGCTAAGTACATCGATGACGAGGTTTTGCCTGCGGTACAGAAAGCTGCTCGAAGCAAAGAAGAAGAGAGAGAGAAGGGTGTAGAAGAAGCGCAGGAGACGTTGGAACCACTTGAGAAAGAGCTTGAAAACAACAAGTTCTTCGGAGGAGAGAGAATTGGATTCGTGGACATTGTCGGCCTGGTTTTAGCCCGTTGGATTCCTGCCATTGAAGAAGCTGTAGGGTTTGAGCTGCTAAGAAGCCAGAAGTTTCCAAACCTAAGAAAATGGAGTGAAGAGTTCGTGAACCACAGCGTCGCGAAGGAAGTTTTGCCTGAAAAGGATGCGCTTGTTGGCTTTCTGAAAGATGTTACGTTTAATCAAAAAGACTAG 666 47.3 MAAEQVQVFGFRSGPFSLRVELALRLKGVAYEHIEEDLLNKKSDLLLKYNPIYKKVPVLVHHGKPISESLVILEYIEETWRDNPIFPQHPHEKALARFWAKYIDDEVLPAVQKAARSKEEEREKGVEEAQETLEPLEKELENNKFFGGERIGFVDIVGLVLARWIPAIEEAVGFELLRSQKFPNLRKWSEEFVNHSVAKEVLPEKDALVGFLKDVTFNQKD 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41036196 41036935 - Lag0012435.1 Lac1g1943 595514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1943 221 Pfam Glutathione S-transferase, C-terminal domain 98 194 IPR004046 -
Lac1g1943 221 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 84 IPR004045 -
Lac1g1943 221 SUPERFAMILY GST C-terminal domain-like 78 213 IPR036282 -
Lac1g1943 221 FunFam Tau class glutathione S-transferase 86 220 - -
Lac1g1943 221 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 217 IPR010987 -
Lac1g1943 221 CDD GST_C_Tau 90 214 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Lac1g1943 221 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 213 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Lac1g1943 221 Pfam Glutathione S-transferase, N-terminal domain 5 78 IPR004045 -
Lac1g1943 221 Gene3D - 86 220 - -
Lac1g1943 221 SFLD Main.3: Omega- and Tau-like 2 214 IPR045073 -
Lac1g1943 221 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Lac1g1943 221 CDD GST_N_Tau 6 80 - -
Lac1g1943 221 Gene3D Glutaredoxin 1 85 - -
Lac1g1943 221 SFLD Glutathione Transferase (cytosolic) 2 214 IPR040079 -
Lac1g1943 221 FunFam Tau class glutathione S-transferase 1 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1928 Lac-Chr1:40918538 Lac1g1943 Lac-Chr1:41036196 1.60E-88 dispersed
Lac1g1943 Lac-Chr1:41036196 Lac1g1947 Lac-Chr1:41060088 7.90E-75 dispersed
Lac1g1943 Lac-Chr1:41036196 Lac1g1944 Lac-Chr1:41045340 1.20E-104 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1943 K00799 - csv:101215228 333.569