Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1947 ATGGCGGAAGGGCTGCAGGTGTTTGGTTCCTGGGCAAGTCCCTTTAGCCGGCGAGTGGAGTTGGCTCTCAAACTCAAAGCCCTAAGATACCTATATATTGAGGAAAACTTGACCAACAAGAGCCATTTGCTTCTGAAATACAACCCACTCCACAAGAAGGTGCCTGTCCTCGTCCACAATGGCAAACCCATTGCAGAGTCTCTTGTCATCCTCGAATACATTGATGAAATTTGGAAAGCCAACCCCATCTTGCCCCAACATCCCCATCAAAGAGCTCAAGCAAGATTCTGGGCCAACTATATTGACGACAAGTTTTTTTCTGCGTGGCGGAAAACTGTTCGAAGTCAAGGAGAAGAGAGAGAGAAGGCGGTAGAGGAAGCATGTAAGGCGTTGGAACCACTTGAGAATGAGCTCAAAAGCAACAAGTTCTTTGGAGGAGACAGCATCGGGTTGGTGGACATTGTTGGCATCTTCATAGGCTACTGGGTTCCTGTCATGCAACAAGCTCTTGGGTTTCAGATTCTGAGCAGCCACAAGTTTCCAAACCTAACCAAATGGAGTGAAGAGCTTATGAACCACAGCGTCGTGAAGGAGGTTCTGCCTCCAAAAGATAGCCTTTTTGCTTATACTCAAACTCTTTATAAAAGAAATGTCGGTTCTAAGCTGTGA 669 46.49 MAEGLQVFGSWASPFSRRVELALKLKALRYLYIEENLTNKSHLLLKYNPLHKKVPVLVHNGKPIAESLVILEYIDEIWKANPILPQHPHQRAQARFWANYIDDKFFSAWRKTVRSQGEEREKAVEEACKALEPLENELKSNKFFGGDSIGLVDIVGIFIGYWVPVMQQALGFQILSSHKFPNLTKWSEELMNHSVVKEVLPPKDSLFAYTQTLYKRNVGSKL 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41060088 41061860 - Lag0012439.1 Lac1g1947 595518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1947 222 FunFam Tau class glutathione S-transferase 84 220 - -
Lac1g1947 222 Gene3D Glutaredoxin 1 83 - -
Lac1g1947 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 212 IPR010987 -
Lac1g1947 222 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Lac1g1947 222 CDD GST_C_Tau 88 213 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Lac1g1947 222 FunFam Tau class glutathione S-transferase 1 86 - -
Lac1g1947 222 Gene3D - 84 221 - -
Lac1g1947 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 210 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Lac1g1947 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Lac1g1947 222 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Lac1g1947 222 SFLD Main.3: Omega- and Tau-like 3 216 IPR045073 -
Lac1g1947 222 CDD GST_N_Tau 5 78 - -
Lac1g1947 222 SFLD Glutathione Transferase (cytosolic) 3 216 IPR040079 -
Lac1g1947 222 Pfam Glutathione S-transferase, C-terminal domain 97 193 IPR004046 -
Lac1g1947 222 SUPERFAMILY GST C-terminal domain-like 76 216 IPR036282 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0259 Lac-Chr13:1864980 Lac1g1947 Lac-Chr1:41060088 3.60E-46 dispersed
Lac1g1929 Lac-Chr1:40928949 Lac1g1947 Lac-Chr1:41060088 2.20E-82 dispersed
Lac1g1930 Lac-Chr1:40939200 Lac1g1947 Lac-Chr1:41060088 4.30E-24 dispersed
Lac1g1943 Lac-Chr1:41036196 Lac1g1947 Lac-Chr1:41060088 7.90E-75 dispersed
Lac1g1947 Lac-Chr1:41060088 Lac7g0355 Lac-Chr7:2733001 9.70E-57 dispersed
Lac1g1944 Lac-Chr1:41045340 Lac1g1947 Lac-Chr1:41060088 4.80E-72 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1947 K00799 - csv:105434443 271.552