Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1971 ATGGCTTCGTGTTGGTGCCGCATAAATCTTCTTCCTCACCGGTGTTCTCCCGGAACGCCGCGCTTTGCCCCCACTTCCTCCCTCCGAAACCCTAATCCTCCTCCGCAATTACTTTCTCCCTTTCCCTCTTCTCTCCTCAATTCCAATAAGTTATCCTATTCCAGAATCCGCCGCCGAAGTTTTACTGCCATGAAAGCTCACATGGCCACCGAACCCAAGCCTGTCTCTGAGGATAAAATGCTTGTTTATGTTCCGCCTCATCCGTTGATCAAGCACTGGGTTTCAGTTTTGAGGAATGAACAAACTCCTTGCCCCATTTTTAAAAGTGCAATGGCAGAGCTTGGGAGGCTACTTATTTATGAAGCTTCAAGGGATTGGTTGCCTACTGTAACGGGGGATATACAGTCACCCATGGGTGTTGCTTCAGTTGAATTTATTGATCCAAGAGAGCCGGTGTCGATAATTCCCATCCTCAGAGCTGGTCTAGCTCTGGCAGAACACGCATCATCTGTATTGCCTGCAACAAAACTGTACCATCTTGGAATAAGCAGGGATGAGGAGACTCTTCAGCCAACTGTATATCTTAACAAGTTACCTGAAATTTTTCCTGAAGGATCTAGAATCTTTGTGGTTGATCCCATGCTTGCAACAGGTGGCACAATAGTGGCAGCTCTTGACCTTCTAAAGGAACGTGGAATTAGCAACAAGCAAATAAAAGTGATATCTGCTGTTGCAGCCCCTCCCGCCCTTCAAAAGCTCAGCGAGAAGTTTCCAGGGCTACACGTATACACCGGAATTATTGACCCGACAGTTAATGACAAAGGGTTTATAATTCCTGGACTTGGAGATGCTGGTGATCGCAGCTTCGGCACATGA 876 47.03 MASCWCRINLLPHRCSPGTPRFAPTSSLRNPNPPPQLLSPFPSSLLNSNKLSYSRIRRRSFTAMKAHMATEPKPVSEDKMLVYVPPHPLIKHWVSVLRNEQTPCPIFKSAMAELGRLLIYEASRDWLPTVTGDIQSPMGVASVEFIDPREPVSIIPILRAGLALAEHASSVLPATKLYHLGISRDEETLQPTVYLNKLPEIFPEGSRIFVVDPMLATGGTIVAALDLLKERGISNKQIKVISAVAAPPALQKLSEKFPGLHVYTGIIDPTVNDKGFIIPGLGDAGDRSFGT 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41297101 41300645 - Lag0012463.1 Lac1g1971 595542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1971 291 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 83 268 IPR050054 -
Lac1g1971 291 FunFam Uracil phosphoribosyltransferase 79 291 - -
Lac1g1971 291 CDD PRTases_typeI 147 267 IPR000836 -
Lac1g1971 291 NCBIfam uracil phosphoribosyltransferase 82 291 IPR005765 GO:0004845(InterPro)|GO:0006223(InterPro)
Lac1g1971 291 Pfam Uracil phosphoribosyltransferase 84 291 - -
Lac1g1971 291 Gene3D - 73 291 IPR029057 -
Lac1g1971 291 MobiDBLite consensus disorder prediction 21 43 - -
Lac1g1971 291 SUPERFAMILY PRTase-like 82 290 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1971 K00761 - - csv:101209447 474.937
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1971 Lac-Chr1:41297101 Lac2g1551 Lac-Chr2:13492051 4.60E-14 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac11g2260 . 30 180 PRT Gene Family AT1G80050 77.5 8.6e-63 237.3
Lac6g0626 . 33 168 PRT Gene Family AT1G80050 80.9 1.2e-56 216.9
Lac6g0253 . 102 248 PRT Gene Family AT1G80050 66.0 4.9e-50 194.9
Lac5g0451 . 30 145 PRT Gene Family AT1G80050 75.0 2.8e-45 179.1
Lac6g0626 . 1 148 PRT Gene Family AT5G11160 81.1 6.2e-64 241.1
Lac11g2260 . 8 145 PRT Gene Family AT5G11160 75.4 3.1e-55 212.2
Lac5g0451 . 8 151 PRT Gene Family AT5G11160 70.8 2.2e-53 206.1
Lac6g0253 . 80 214 PRT Gene Family AT5G11160 70.3 1.5e-49 193.4
Lac6g0253 . 73 252 PRT Gene Family AT1G27450 79.8 2.0e-76 282.7
Lac11g2260 . 7 180 PRT Gene Family AT1G27450 74.7 4.0e-72 268.5
Lac6g0626 . 11 168 PRT Gene Family AT1G27450 73.4 5.2e-64 241.5
Lac5g0451 . 3 145 PRT Gene Family AT1G27450 74.3 1.8e-56 216.5
Lac9g1758 . 77 557 PRT Gene Family AT2G16570 84.9 4.7e-241 831.2
Lac9g1758 . 77 557 PRT Gene Family AT4G34740 85.3 1.6e-241 832.8
Lac9g1758 . 56 530 PRT Gene Family AT4G38880 72.3 6.7e-197 684.5
Lac6g0253 . 73 252 PRT Gene Family AT1G27450 79.8 2.0e-76 282.7
Lac11g2260 . 7 180 PRT Gene Family AT1G27450 74.7 4.0e-72 268.5
Lac6g0626 . 11 168 PRT Gene Family AT1G27450 73.4 5.2e-64 241.5
Lac5g0451 . 3 145 PRT Gene Family AT1G27450 74.3 1.8e-56 216.5
Lac11g2260 . 30 180 PRT Gene Family AT1G80050 77.5 8.6e-63 237.3
Lac6g0626 . 33 168 PRT Gene Family AT1G80050 80.9 1.2e-56 216.9
Lac6g0253 . 102 248 PRT Gene Family AT1G80050 66.0 4.9e-50 194.9
Lac5g0451 . 30 145 PRT Gene Family AT1G80050 75.0 2.8e-45 179.1
Lac11g2260 . 6 104 PRT Gene Family AT4G22570 80.8 1.3e-43 172.9
Lac5g0451 . 1 104 PRT Gene Family AT4G22570 77.1 1.2e-41 166.4
Lac6g0626 . 11 100 PRT Gene Family AT4G22570 78.9 3.1e-37 151.8
Lac11g2260 . 1 96 PRT Gene Family AT4G12440 82.3 2.8e-40 161.8
Lac5g0451 . 1 96 PRT Gene Family AT4G12440 80.2 2.0e-38 155.6
Lac6g0626 . 4 99 PRT Gene Family AT4G12440 78.1 4.9e-37 151.0
Lac6g0626 . 1 148 PRT Gene Family AT5G11160 81.1 6.2e-64 241.1
Lac11g2260 . 8 145 PRT Gene Family AT5G11160 75.4 3.1e-55 212.2
Lac5g0451 . 8 151 PRT Gene Family AT5G11160 70.8 2.2e-53 206.1
Lac6g0253 . 80 214 PRT Gene Family AT5G11160 70.3 1.5e-49 193.4
Lac8g2223 . 1 186 PRT Gene Family AT1G71750 66.5 6.9e-70 261.2
Lac2g1551 . 63 516 PRT Gene Family AT1G55810 85.7 2.0e-226 782.3
Lac11g0184 . 19 468 PRT Gene Family AT1G55810 73.8 1.9e-192 669.5
Lac2g1551 . 113 515 PRT Gene Family AT3G27440 77.2 6.1e-185 644.4
Lac11g0184 . 80 470 PRT Gene Family AT3G27440 75.7 6.3e-174 607.8
Lac11g0184 . 1 470 PRT Gene Family AT3G27190 86.2 9.3e-238 820.1
Lac2g1551 . 50 515 PRT Gene Family AT3G27190 74.4 4.1e-209 724.9
Lac1g1971 . 14 291 PRT Gene Family AT3G53900 68.7 2.8e-107 386.0
Lac2g1551 . 48 516 PRT Gene Family AT4G26510 84.8 1.6e-234 809.3
Lac11g0184 . 10 468 PRT Gene Family AT4G26510 75.4 3.8e-204 708.4
Lac11g0184 . 1 470 PRT Gene Family AT5G40870 86.2 3.6e-237 818.1
Lac2g1551 . 50 518 PRT Gene Family AT5G40870 73.2 3.5e-208 721.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39