Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1985 ATGGAAACCAATCTCTCCTTTCTCTTTCTTCTCATTTTACTCTCACTCTTCCTCTGCTGCCTGGCCAAGCGCTGCCCGGACTGCGGCCGCTCGCCGGTGCCGTACCCACTAAGCACGCGCCCGGACTGCGGCGACCCTCTTTACAGAGTCCGCTGCACCGCCGGCGAGCTCTGGTTCGAGTCCGTCAATGGGTCTTCCTATTTGATCACCTCCGTTAATCCCGTGGCTCAGAGACTGATCGTCCGGCCGCCTGGGTTGGCCAAAAACGCCTGCGTTTCGTCGGATTTTGGGAGCCATGGTTTTTGGCTCGGTACTGGCCTTCCTTTCACCATTACCAATAGAAACACTGTTCTGCTCTTCAACTGTTCGATGGAAGTTCTCGAAAAAAATTGGAACTGTTCGGCTAATAGCGTCTGTCATGACTTCATTCGGCAGAATCCGGTGGCGATGGCGGCGTGTAAGGCGGCGCCGACGTGTTGTTGGTATACAAGTGGAGGGTCCATCACTGAGTATAGAATCAGGGTGCGGAAGGAGCGGTGTTCGGCTTATGAATCTTTTGTGAATTTGGGTGGTTCTGTTCCGGCGAAGAAGTGGCCGGAACCTGGGGTGGAGATTCAATGGGCACCGCCACGAGAGCCGCCGTGTCGAGTGGATGTGGATTGCCGGAATTGGGAAAATTCTGCTTGTTTGCCGGACCCTGCAAATGCCCGCCAGAGGAGTTGCTTCTGCAAGGTGCCTTTCAAGTGGGATCCTGTGAATGGCTTGTGTAATGGCAACAATGTGAAAATACAGAACAAGAAAACTCACAAGAAGCATAAGAAGATGCCTGCTATTCTTGGAGGAATGGCGGGAGTACTTGCAATGATGATTGGAGGATCAACTATGTTTATAGTTTTCAAAAGACGTCGACAGATTCCGAAAGGGAACGAACTAAGTTCGAAACAAGTTCGCGAAGTGATTCTAAGTGCCAACAGCAGTGGCAAATCGGCGAGGATGTTCACAACCAAAGAGATAGCAAAGGCTACAAACAACTTCTCTAAAGAGAACTTGCTTGGCTCTGGTGGCTATGGAGAGGTCTTCAAAGGCAGCCTAGAAGATGGAACCTTAATAGCTGTTAAGCGTGCCAAGTTGGGGTGCATGAAGGGAATCGATCAAATCCTGAACGAGGTTCGAATTCTTTGTCAGGTGAACCATCGATGCCTTGTTCGTCTACTTGGATGTTGTCTCGAACTCGAGCAACCCCTGTTAATATATGAGTACATCTCAAATGGGAACCTATTTGATCACCTTCATGGAAATACAAGTTCAAGCAAATGGCCACCGCTGACATTGAGTCGTCGACTCTACATTGCTCACCAAACAGCTGATGGCCTTGCCTATCTACACACTTCAGCCATGCCAAGAATCTATCACCGAGACATAAAATCAAGCAATATTCTACTAGATGAGAAGTTGAATGCTAAAGTTGCCGATTTCGGGCTTTCTAGATTGGCTGTTACTGAATCAAGCCATATTACAACTGGGGCTCAGGGAACATTAGGTTATCTGGACCCAGAATATTACCTTAATTTTCAATTGACTGACAAGAGTGATGTTTACAGTTTTGGAGTCGTCATGTTGGAGTTATTGACTTCCGAGAAAGCCATTGATTTTAATAGAGAAGAAGAAGACATTAACTTAGCAGTTTATATCAAGAAGATTATCAGAGAAGACAGATTGTTGGAGGTTGTTGATCCTGTGATTAAAGAGAGAGCAAGCAGAGTTGAAATGGAGATAATCAAGGCATTAGGGTCTCTAGCAGCAGCTTGCTTGGATGAAAAGAGGCAGAACAGACCTGCCATGAAAGAAGTTGCTGATGAGCTAGCCAACATTATTTCCATTCTTAATAGTGAGGTTCCAAATATTGACTAA 1911 46.94 METNLSFLFLLILLSLFLCCLAKRCPDCGRSPVPYPLSTRPDCGDPLYRVRCTAGELWFESVNGSSYLITSVNPVAQRLIVRPPGLAKNACVSSDFGSHGFWLGTGLPFTITNRNTVLLFNCSMEVLEKNWNCSANSVCHDFIRQNPVAMAACKAAPTCCWYTSGGSITEYRIRVRKERCSAYESFVNLGGSVPAKKWPEPGVEIQWAPPREPPCRVDVDCRNWENSACLPDPANARQRSCFCKVPFKWDPVNGLCNGNNVKIQNKKTHKKHKKMPAILGGMAGVLAMMIGGSTMFIVFKRRRQIPKGNELSSKQVREVILSANSSGKSARMFTTKEIAKATNNFSKENLLGSGGYGEVFKGSLEDGTLIAVKRAKLGCMKGIDQILNEVRILCQVNHRCLVRLLGCCLELEQPLLIYEYISNGNLFDHLHGNTSSSKWPPLTLSRRLYIAHQTADGLAYLHTSAMPRIYHRDIKSSNILLDEKLNAKVADFGLSRLAVTESSHITTGAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVMLELLTSEKAIDFNREEEDINLAVYIKKIIREDRLLEVVDPVIKERASRVEMEIIKALGSLAAACLDEKRQNRPAMKEVADELANIISILNSEVPNID 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41423375 41425469 - Lag0012477.1 Lac1g1985 595556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1985 636 ProSiteProfiles Protein kinase domain profile. 345 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1985 636 Gene3D Phosphorylase Kinase; domain 1 307 420 - -
Lac1g1985 636 SUPERFAMILY Protein kinase-like (PK-like) 327 621 IPR011009 -
Lac1g1985 636 Gene3D Transferase(Phosphotransferase) domain 1 421 632 - -
Lac1g1985 636 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 23 624 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lac1g1985 636 CDD TM_EGFR-like 276 305 - -
Lac1g1985 636 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524(InterPro)
Lac1g1985 636 FunFam Wall-associated receptor kinase-like 20 308 420 - -
Lac1g1985 636 SMART serkin_6 345 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1985 636 FunFam Wall-associated receptor kinase-like 20 421 633 - -
Lac1g1985 636 CDD STKc_IRAK 351 624 - -
Lac1g1985 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1985 636 Pfam Protein tyrosine and serine/threonine kinase 348 621 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2937 Lac-Chr10:43980454 Lac1g1985 Lac-Chr1:41423375 2.80E-152 dispersed
Lac1g1985 Lac-Chr1:41423375 Lac8g1781 Lac-Chr8:36002301 2.50E-81 dispersed
Lac6g2565 Lac-Chr6:43355414 Lac1g1985 Lac-Chr1:41423375 8.10E-37 dispersed
Lac1g1985 Lac-Chr1:41423375 Lac8g2932 Lac-Chr8:46347207 9.80E-187 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85898 PF07714 PK_Tyr_Ser-Thr 6.40E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1985 - - - 0.0