Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1991 ATGGCCTCTGTTTTTCCCATCAGATTCCTCTATGCTGCCGTTTTTCTCTTCATCCAAACACTATCGTCCCACAACCAAGAGTTCTTCTACGCTGGATTCGGCCAAGGATTCGCCAACATAACTTTGAACGGAGCCGCAAAGTTTGAGAAGAATCTTACTCTCAAACTGACCGACCAATCCGACAGAATGTTATCCGGTCGTGCATTTCATAAATTTCCTCTCAACTTCTTCAGCTCCAATGGCCGAGTTCCTTCTTTCTCCACCTCCTTTGCTTTCGTCGTCGTCCCCGAGATCCCTGAAGCTCCCAATTTAAGCGGCCATGGCTTCACTTTCTCCATTGCACCTTCCCGCAGATTCATGGGTTTTCCCGGACAGTATTTGGGCCTCCCCAAGATGACCGGTAACGACAACCTCTCACAACATATCTTCGCCGTCGAATTCGACACTTTTCAAGATCCCCAATTCCGAGATATCAACGACAACCACGTCGGAATCGACGTCGGCAGCTTCGTTTCCCGAGCATCCGCCGCCGCTGCCTACTTCGCCGACGGCGACACCAAACGAGGTCTGTTTCTGAAAAGTGGGAAGGTTCTCAAAGCTTGGATTGACTACGATTCGACCCGAAATTCCGTCAGTGTCTCAATTTCGCCGGACAATTCCAAACCCAGGGAGCCGATTTTGTCCTGTGAAGTCGATCTGTCGTTGATTCTGGACGATTACATGTACGTTGGATTTTCTGCCTCCACCGGTTTGTACGCTAGCTCACACTACATTTTGGGTTGGAGCTTCACGATGAACGGTGAAGCGCGAGAACTCGATCTTTCTTCACTTCCTCTGCCGTTTAAACAACGCCCTGCTACATTGATCGCAGTCATCTCTGTTTCAGTGACAGTGTTCACAGTTTCAGTACTGTGTGTTACTGTCTACGTAATTAGAAAGATTAAGTACCGCGACAGGATTGAATCATGGGAGCTTCAGATTGGGCCGCGTCGGTACTCTTACAAAGAGCTCAAGCAAGCCACCAATGGCTTCAGAGAAACAGAGCTTCTCGGGCGTGGCGGATTCGGTAAGGTTTACAGAGGAACTCTCCCAATTTCCAAAACCCAAGTCGCCGTCAAGCGAATTTCTCAAGAATCGAAACAGGGTCTGCGGGAATTCGTCTCTGAAATCGAAACGATCGGTCTTCTTCGTCATCGGAATTTGGTTCAATTGATGGGATGGAGCCGCCGCCGTCGGGAGGATCTTCTTCTTGTTTACGATTATATGGCGAATGGAAGCTTGGATAAATACCTGTTCGATGAACCCAAACGAACTCTTATTTGGGAACAGAGGATGAAGATTATAAAAGATGTCGCCTCTGCTTTGCTGTATCTTCACGAAGGCTACGAGCAGGTGGTGATTCACAGAGATATAAAGGCCAGCAACGTTCTTTTAGATAACGATTTCAATGGAAGATTGGGGGATTTTGGTCTCGCGAGAGTTTACGAACATGGGTCGATTCCAAATTCGACTAGGGTCGTCGGAACTCTGGGGTATCTGGCGCCGGAGCTGGCCAGAACAGGGAAAGCGACGACAAGCTCCGATGTGTATGCATTTGGGATGCTGATGCTTGAAGTGGCCTGTGGCCGCCGGCCCGTCGAGCGGAGGGCGCCGGCGGAGGAGGCGATTCTGGTGGATTGGGTGTGGGAGAATCACAAGGAAGGGAAGCTTCTGGTTGTGGTGGATCGAAAACTGAATGGGGAATTCGATGAAGTTGAAGCGTTGAAGGTGTTGAAATTGGGGATTGTTTGTTCAAACCTTAAGCCGATGCGGCGGCCGAGCATGAAGCAGATAGTGAGATGTTTGGACGGCGATGGCGGTGTCGCCGGCGATCCTATGGCGGCCGGAGAGATTGACGAGGCGACGAATAGTGAAGTGTGGCTTGATGAATTTCTGCAGTCGGTCGGATCTTCATTCGTCAGCGATGAAGCATCTCTGTCGCAGCAACTTTGA 1992 49.9 MASVFPIRFLYAAVFLFIQTLSSHNQEFFYAGFGQGFANITLNGAAKFEKNLTLKLTDQSDRMLSGRAFHKFPLNFFSSNGRVPSFSTSFAFVVVPEIPEAPNLSGHGFTFSIAPSRRFMGFPGQYLGLPKMTGNDNLSQHIFAVEFDTFQDPQFRDINDNHVGIDVGSFVSRASAAAAYFADGDTKRGLFLKSGKVLKAWIDYDSTRNSVSVSISPDNSKPREPILSCEVDLSLILDDYMYVGFSASTGLYASSHYILGWSFTMNGEARELDLSSLPLPFKQRPATLIAVISVSVTVFTVSVLCVTVYVIRKIKYRDRIESWELQIGPRRYSYKELKQATNGFRETELLGRGGFGKVYRGTLPISKTQVAVKRISQESKQGLREFVSEIETIGLLRHRNLVQLMGWSRRRREDLLLVYDYMANGSLDKYLFDEPKRTLIWEQRMKIIKDVASALLYLHEGYEQVVIHRDIKASNVLLDNDFNGRLGDFGLARVYEHGSIPNSTRVVGTLGYLAPELARTGKATTSSDVYAFGMLMLEVACGRRPVERRAPAEEAILVDWVWENHKEGKLLVVVDRKLNGEFDEVEALKVLKLGIVCSNLKPMRRPSMKQIVRCLDGDGGVAGDPMAAGEIDEATNSEVWLDEFLQSVGSSFVSDEASLSQQL 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41493945 41495936 + Lag0012483.1 Lac1g1991 595562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1991 663 CDD lectin_legume_LecRK_Arcelin_ConA 27 267 IPR001220 GO:0030246(InterPro)
Lac1g1991 663 Pfam Legume lectin domain 26 277 IPR001220 GO:0030246(InterPro)
Lac1g1991 663 FunFam L-type lectin-domain containing receptor kinase S.4 422 626 - -
Lac1g1991 663 Gene3D Transferase(Phosphotransferase) domain 1 422 621 - -
Lac1g1991 663 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 280 IPR013320 -
Lac1g1991 663 FunFam serine/threonine-protein kinase PBS1-like 312 421 - -
Lac1g1991 663 Gene3D Phosphorylase Kinase; domain 1 329 421 - -
Lac1g1991 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1991 663 FunFam L-type lectin-domain containing receptor kinase V.9 25 268 - -
Lac1g1991 663 SUPERFAMILY Protein kinase-like (PK-like) 326 613 IPR011009 -
Lac1g1991 663 ProSiteProfiles Protein kinase domain profile. 344 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1991 663 PANTHER - 33 618 IPR050528 GO:0005886(PANTHER)
Lac1g1991 663 Pfam Protein tyrosine and serine/threonine kinase 347 615 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1991 663 ProSitePatterns Protein kinases ATP-binding region signature. 350 373 IPR017441 GO:0005524(InterPro)
Lac1g1991 663 Gene3D - 24 277 - -
Lac1g1991 663 SMART serkin_6 344 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1991 663 CDD STKc_IRAK 350 617 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3129 Lac-Chr10:45593322 Lac1g1991 Lac-Chr1:41493945 4.60E-214 dispersed
Lac1g1991 Lac-Chr1:41493945 Lac1g1994 Lac-Chr1:41518021 1.00E-173 dispersed
Lac1g1993 Lac-Chr1:41508702 Lac1g1991 Lac-Chr1:41493945 4.40E-16 dispersed
Lac1g1991 Lac-Chr1:41493945 Lac1g1992 Lac-Chr1:41502278 5.70E-145 tandem
Lac12g0019 Lac-Chr12:292516 Lac1g1991 Lac-Chr1:41493945 8.90E-58 transposed
Lac12g2052 Lac-Chr12:37625232 Lac1g1991 Lac-Chr1:41493945 1.00E-66 transposed
Lac1g1991 Lac-Chr1:41493945 Lac10g3126 Lac-Chr10:45578603 1.20E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85899 PF07714 PK_Tyr_Ser-Thr 7.50E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1991 - - - 0.0