Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1992 ATGTTAACAATTAAAATAAAAGACATCAACGACAATCACGTCGGCGTCGATATTGGCAGCTTCGTGTCCAAGGCAGCCGTTGCCGTCGCTTACTTCACAGACGACGGCGAGAAGAAACGAGAGTTGAGTCTCAAGGGTGGGAAATCGATTATCAAAGCTTGGATTGACTATGATTCGACACAGAATTCTCTCAATGTCTCGATTTCGCCTTTTAATTCAAAACCCAGAATGCCGATTCTGTCGTATGAAGTCTATCTGTCGCCGATTCTAAGCGAATTTATGTTCATCGGATTCTCTGCTTCCACTGGCTTGTACGGTAGTTCCCATTTGATTTTGGGTTGGAGCTTCAAGATGAACGGCCAAGCTCGAGAACTCGATATTTCTTATCTTCCTTCGCCATTCAATCGCCGGTCATCTAAATTAATAGTACGAATATCTGTTTTAGCATCAATTCTCACAGTCTCTGTCATTTCTGTAGCTGTTTATATGATCAAAATGATCAAGAATGACGATCGGATTGAGTTATGGGAGTTTCAATTATGCCCACATCGGTATTCCTACAAAGAGCTCCACAGAGCCACGAGAGGATTCAGAGACAAGGAGCTCCTCGGCCATGGCGGATTCGGGAAGGTTTACAGAGGAACACTTCCAAATTCCAAAACCCAAGTCGCCGTTAAGCGAATTTCGAACGAATCGAAACAGGGTCTTCGCGAATTCGTGTCGGAAATCGCCACAATCGGCAAACTCCGTCACCGGAATTTAGTTCAGCTCTTGGGATGGTGCCGTCGCCGGAAAGATCTTCTTCTTGTCTACGATTACATGGAGAATGGAAGCTTGGACAAATACCTTTTCGACAACCCGAAAAAGAATCTGAATTGGGAACAGAGATTCAGAATCATAAAGGGGGTCGCCTCTGCTCTGCTTTATCTTCACGAGGGATACGAACAGGTGGTGATTCACAGAGACGTGAAGGCGAGCAATGTGTTATTAGACGGCGAATTGAACGGGAGATTGGGGGATTTCGGGCTCGCGAGAGTGTACGAACACGGGTCGGATCCTGGGACGACCCTGGTCGCCGGAGCTGGCGAGAACAGGGAAATCGACGACGAGTTCGGATGTTTATGCGTTCGGGGGGTTGATGCTGGAAGTGGCGTGTGGGCGGCGGCCGGTGGAGATGAAGGCGGAGCCGGAGGAGATGGTGTTGGTGGATTTGGTGTGTGA 1221 47.91 MLTIKIKDINDNHVGVDIGSFVSKAAVAVAYFTDDGEKKRELSLKGGKSIIKAWIDYDSTQNSLNVSISPFNSKPRMPILSYEVYLSPILSEFMFIGFSASTGLYGSSHLILGWSFKMNGQARELDISYLPSPFNRRSSKLIVRISVLASILTVSVISVAVYMIKMIKNDDRIELWEFQLCPHRYSYKELHRATRGFRDKELLGHGGFGKVYRGTLPNSKTQVAVKRISNESKQGLREFVSEIATIGKLRHRNLVQLLGWCRRRKDLLLVYDYMENGSLDKYLFDNPKKNLNWEQRFRIIKGVASALLYLHEGYEQVVIHRDVKASNVLLDGELNGRLGDFGLARVYEHGSDPGTTLVAGAGENREIDDEFGCLCVRGVDAGSGVWAAAGGDEGGAGGDGVGGFGV 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41502278 41503605 - Lag0012484.1 Lac1g1992 595563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1992 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1992 406 SUPERFAMILY Concanavalin A-like lectins/glucanases 6 219 IPR013320 -
Lac1g1992 406 SUPERFAMILY Protein kinase-like (PK-like) 174 353 IPR011009 -
Lac1g1992 406 Gene3D Phosphorylase Kinase; domain 1 182 273 - -
Lac1g1992 406 FunFam - 274 364 - -
Lac1g1992 406 Pfam Protein tyrosine and serine/threonine kinase 200 348 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1992 406 Gene3D Transferase(Phosphotransferase) domain 1 274 367 - -
Lac1g1992 406 SMART serkin_6 197 387 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1992 406 PANTHER - 8 360 IPR050528 GO:0005886(PANTHER)
Lac1g1992 406 Pfam Legume lectin domain 6 130 IPR001220 GO:0030246(InterPro)
Lac1g1992 406 ProSitePatterns Protein kinases ATP-binding region signature. 203 226 IPR017441 GO:0005524(InterPro)
Lac1g1992 406 ProSiteProfiles Protein kinase domain profile. 197 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1992 406 FunFam L-type lectin-domain containing receptor kinase S.1 182 273 - -
Lac1g1992 406 Gene3D - 3 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1992 Lac-Chr1:41502278 Lac1g1994 Lac-Chr1:41518021 8.40E-107 dispersed
Lac1g1991 Lac-Chr1:41493945 Lac1g1992 Lac-Chr1:41502278 5.70E-145 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85900 PF07714 PK_Tyr_Ser-Thr 1.30E-35 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1992 - - - 0.0