Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1998 ATGGCGGCCATCTTCATCTTCACGCTAATTCTTTCAATACTCATTTCTTCCGCTTCCGGAGCTTCAGAAGATCTCAGCTTCACCTTCAATGGCTTCCGCTCCGGCAATCTCACCCTCGACGGCGTCGCTGAAGTAACCCCCAACGGCCTTTTGAAGCTCACCAACGACGTCGACCAACAAATCGGCCACGCCTTTTACCCCAATTCCATTTCCTTCAAAAACCCATCAGACAATTCCTCAATTTTCTCCTTCTCTGCCACTTTCGTCTTCGCCATAAAACCCGAAATCGAAGACCTCGGCGGCCATGGAATTGCCTTCGTCGTTTCGCCGTCGATGGGTCTCCCGGGAGCTCGGCCCAGCGAAAGCCTCGGCCTGTTCAACGAGTCCAACGACGGGAACGAAACCAATCACATCTTCGCCGTCGAGCTCGACACGATACGGAATCTGGACCTTGAAGACATCAACGACAACCATGTCGGAATCAACTTTAACAGCCTGGTGTCAGTGCGGGCAGCGCCGGCGGGGTATTGGGTCGACGGCAAATTCACGAATTTGAAGCTAATCAGCGGCGAACCGATGCAAGTTTGGGTGGAATACGATAGTTTCGAGAAACGAATCGATGTCACCATGGCTTCAATCGAGATCATCGAAAAACCCAAAACCCCCCTTTTGTCTTTGCGGCGGGATTTATCGTCGGTCATCAACGACGTCATGTACGTCGGATTCTCGTCGTCGACCGGCTCCATCACGACGTCGCATTACGTTCTGGGCTGGAGCTTTGGCATCAATGGCGAAGCGCGGAGCCTTGCTCTGTCTCAACTCCCGGAGCTTCCACCTCGGCCGAGAAGAAAACAGAGATCTAAATTCCTGACGGTGGGGCTGCCGATGATTTGTGCTTCAGCGGCTCTAATGGCAGTTTCCGGTGTACTGTACTTCATTCATCGAAGGCGGAAATTCGCAGAGGTTCTAGAGGATTGGGAGCTCGAATACGGACCGCAGAGGTTCAAATACAAGGATCTGTACACAGCAACAAAAGGATTCAGAGAGAGACAGTTTCTGGGATTCGGCGGATTCGGGCGAGTTTACAAAGGGGTTCTACCGAATTCGAAAATGGAAGTGGCAGTGAAGAAGATATCTCAGGAGTCGAGACAGGGGATGAAGGAATTCGTGGCGGAGATAGTGAGTGTAGGGCGGTTGCGGCACCGGAACCTGGTGGCGCTGCTGGGGTACTGCCGGCGGAAAGAGGAGCTGTTTCTGGTGTACGATTACATGGAGAATGGAAGCTTGGATACGTACCTACACGAGTGGCCGGAGATGACGATAAATTGGGAGCAAAGATTTGAGATAATAAAAGGGGTTGCGTCGGGGCTGTTTTATCTGCACGAACAGTGCGAGAAAGTTGTGATTCATAGGGATGTGAAGGCGAGTAATGTATTGCTTGACGCAGAGTTCAATGGGAGATTGGGGGATTTTGGTTTGGCCAAAATGCATGACCGTGGCGCTGATCCTCGAACCACCCACGTCGTTGGAACTCTTGGGTATCTAGCACCAGAGCACATAAGAACAGGGAGAGCCACGACGAGAACAGACGTATACGCATTCGGAGCATTTCTTCTCGAAGTCGCCTGCGGTCGAAGGCCGATCCACCAGCAAGACGACGCCGACGATTTCATATTAGTGGATTGGGTCTACTCATGTTGGGCAAACGGCAACATTCTCCGAACCGCCGACCCTAAATTGGGCGGCAATTTCGAACCCTCCGAGCTCGAACTGGTCCTCAAGCTTGGCTTGCTCTGTTCCCACTCCTCGCCCTCGGTTCGCCCCACCATGCGCCAGGTTTTGCAGTACTTGGAGGCCGATGCGCCGCTGCCCGAGCTCGCCTCGCTCCGCTGGCGGCTTTCCGGCAGTGGGTTCTTGAACTTGAGCCGTCGCGACGCCGACAACGACGGCGATGGCGATGGCGATGGGTCCGATGATTTTGCGATGTCTTATCCGGTTTCGACGGAAAGGAATGTGACGAGTTCGTCGTCGGTTGTGGAGTCTATTCTGTCCGACGGCCGCTGA 2064 53.49 MAAIFIFTLILSILISSASGASEDLSFTFNGFRSGNLTLDGVAEVTPNGLLKLTNDVDQQIGHAFYPNSISFKNPSDNSSIFSFSATFVFAIKPEIEDLGGHGIAFVVSPSMGLPGARPSESLGLFNESNDGNETNHIFAVELDTIRNLDLEDINDNHVGINFNSLVSVRAAPAGYWVDGKFTNLKLISGEPMQVWVEYDSFEKRIDVTMASIEIIEKPKTPLLSLRRDLSSVINDVMYVGFSSSTGSITTSHYVLGWSFGINGEARSLALSQLPELPPRPRRKQRSKFLTVGLPMICASAALMAVSGVLYFIHRRRKFAEVLEDWELEYGPQRFKYKDLYTATKGFRERQFLGFGGFGRVYKGVLPNSKMEVAVKKISQESRQGMKEFVAEIVSVGRLRHRNLVALLGYCRRKEELFLVYDYMENGSLDTYLHEWPEMTINWEQRFEIIKGVASGLFYLHEQCEKVVIHRDVKASNVLLDAEFNGRLGDFGLAKMHDRGADPRTTHVVGTLGYLAPEHIRTGRATTRTDVYAFGAFLLEVACGRRPIHQQDDADDFILVDWVYSCWANGNILRTADPKLGGNFEPSELELVLKLGLLCSHSSPSVRPTMRQVLQYLEADAPLPELASLRWRLSGSGFLNLSRRDADNDGDGDGDGSDDFAMSYPVSTERNVTSSSSVVESILSDGR 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41574633 41577947 + Lag0012490.1 Lac1g1998 595569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1998 687 Pfam Legume lectin domain 25 274 IPR001220 GO:0030246(InterPro)
Lac1g1998 687 SMART serkin_6 347 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1998 687 Gene3D Phosphorylase Kinase; domain 1 332 423 - -
Lac1g1998 687 MobiDBLite consensus disorder prediction 664 687 - -
Lac1g1998 687 CDD STKc_IRAK 353 618 - -
Lac1g1998 687 ProSitePatterns Protein kinases ATP-binding region signature. 353 377 IPR017441 GO:0005524(InterPro)
Lac1g1998 687 Gene3D Transferase(Phosphotransferase) domain 1 424 630 - -
Lac1g1998 687 CDD lectin_legume_LecRK_Arcelin_ConA 25 264 IPR001220 GO:0030246(InterPro)
Lac1g1998 687 FunFam L-type lectin-domain containing receptor kinase S.4 424 630 - -
Lac1g1998 687 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 280 IPR013320 -
Lac1g1998 687 FunFam Lectin-domain containing receptor kinase A4.3 332 423 - -
Lac1g1998 687 ProSiteProfiles Protein kinase domain profile. 347 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1998 687 PANTHER - 27 630 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Lac1g1998 687 FunFam L-type lectin-domain containing receptor kinase V.9 24 267 - -
Lac1g1998 687 MobiDBLite consensus disorder prediction 643 687 - -
Lac1g1998 687 Pfam Protein kinase domain 349 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1998 687 Gene3D - 22 272 - -
Lac1g1998 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1998 687 SUPERFAMILY Protein kinase-like (PK-like) 328 622 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3126 Lac-Chr10:45578603 Lac1g1998 Lac-Chr1:41574633 1.60E-232 dispersed
Lac10g3127 Lac-Chr10:45582749 Lac1g1998 Lac-Chr1:41574633 2.30E-242 dispersed
Lac10g3254 Lac-Chr10:46565625 Lac1g1998 Lac-Chr1:41574633 1.00E-157 dispersed
Lac10g3255 Lac-Chr10:46573527 Lac1g1998 Lac-Chr1:41574633 2.20E-157 dispersed
Lac1g1998 Lac-Chr1:41574633 Lac3g0147 Lac-Chr3:1017958 5.70E-132 dispersed
Lac9g1402 Lac-Chr9:31787145 Lac1g1998 Lac-Chr1:41574633 3.10E-21 dispersed
Lac1g1994 Lac-Chr1:41518021 Lac1g1998 Lac-Chr1:41574633 7.90E-147 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85902 PF00069 Pkinase 7.60E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1998 - - - 0.0