Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2021 ATGAGCGTGAACATAACCTCCATCAAAACCGCCTCCAATGGCGTTTGGCAAGGCGACAACCCTCTCGATTTCGCCTTCCCTCTCTTAATCCTTCAGTCCGTTCTCATCCTCCTCCTCACCCGCTTCCTCGCCCTCCTTCTCAAGCCCCTCCGCCAGCCCAAAGTCATCGCCGAGATCGTCGGCGGGATTCTTCTCGGTCCCTCTGCTTTCGGACGGAACAAAGCTTATCTCCACCGGATTTTCCCTCAATGGAGCACCCCCATTCTCGAATCCGTCGCCAGTATCGGTTTGTTGTTCTTTCTCTTTCTCGTCGGACTCGAACTCGATTTGTCCTCCATCCGCCGCAGCGGCCGCAGGGCTTTCGGAATCGCCCTCGCCGGAATCTCCGTCCCCTTCCTCTCCGGAATCGGCGTCGCTTTCATCCTCCGTAAGACTATCGACGGCGCCGACAAGGTCGGCTACGGCCAGTTCATTGTATTCATGGGTGTCGCTCTCTCCATCACCGCCTTCCCTGTTCTGGCCCGCATTTTAGCCGAGCTCAAACTCCTCACCACCCAAGTCGGCGAGACCGCCATGGCTGCCGCCGCCTTCAACGACGTCGCCGCCTGGATCCTCCTCGCACTCGCTGTAGCCCTTGCCGGTAACGGCACCGAAGGCGGGGCCCAGAAGAGTCCGTTGGTTTCCGTGTGGGTCCTACTCTCCGGAGCCGGGTTCGTGGTCTTCATGATGGTGGTGACCCGACCCGGGATGAAGTGGGTCGCGCGGCGGTGCTCGTACGAGCACGACGCCGTGGACGAGGCGTACATCTGTTTGACGTTGGTTGGAGTGCTGGTTTCGGGATTCGTGACGGATTTGATCGGAATCCATTCGATTTTTGGCGGATTTATATTCGGATTGACGGTGCCGAAAGGGGGGAGGTTCGCGGAGAGATTGATCGAGAGGATTGAGGATTTTGTGTCGGGTCTTCTTCTTCCTCTGTATTTTGCGTCGAGTGGGTTGAAGACGGACGTGGCGAAGATCAGAGGAGGAAGAGCGTGGGGGCTGCTGGCGCTGGTTATATCGACGGCGTGTGCAGGGAAGATTCTGGCGACGTTCGTGGCGGCGATGGCGTTTCTGATGCCGGCAAGGGAGGCGCTGGCGTTGGGGCTGCTTATGAACACCAAAGGCTTGGTTGAACTCATCGTGCTCAATATCGGCAAGGAGAAAAAGGTTCTTAACGACGAAGTATTTGCCATATTAGTGTTAATGGCGCTATTCACAACGTTCATCACGACCCCCACCGTGATGGCGGTTTACAAGCCAGCCCGCGGCGGCTCCACCCGAACCCACCGGAAACTCCGCGACCTCGCCGCCGACGACTCGAACTCCGACGACGAGCTCCGAATCCTAGCCTGCCTGCACAGCTCCGGCAACGTTCCCTCTCTAATCAGCCTGACCGAGTCAACTCGCAGCACCAAAAACTCCTCCCTCAAACTCTTCGTCATGCACCTCGTCGAGCTCACCGAGCGCTCTTCGTCCATCATGATGGTCCAACGGGCTCGCAAAAACGGCTTCCCTTTCTTCGCCAGGTTCCGCAAGGGCGAGTGGCACGACCAGATGGCCGGCGCCTTCCAGGCCTACAGCCAACTGGGCCGGGTCAAGGTCCGGCCCACTACGGCAGTCTCTTCCTTGGCAACCATGCATGAGGATATCTGCCACGTGGCCGACGATAAGAGGGTGACCATGATCATCTTGCCGTTTCATCGGAATTGGAGGATGGTCGGCGGCGAGGAGGAGAATGTGGGCCATGGCTGGAGAGTTGTGAACCAGCGGGTGCTTAAGAGTGCGCCTTGCTCGGTCGCGGTTCTTGTGGACCGTGGATTTGGGGCTAATGGGTCTCAGACGCCTGGGCCTGGGTCACTGGTTGCTGTGGGACAGAGGATTTGTGTGGTGTTCTTTGGTGGGCCCGATGACAGGGAGGCGCTGGAGTTGGGTGGCCGGATGGCGGAGCATCCGGCGGTCAAGGTCACGGTGGTGAGGTTTCGTCCGTCGTCGTCCGATGGGGTCGAGGGTAGTAATGTCATTTTGCGACCTCTGCATTCTAAATCTGGCGACAACCATTATAGCTTCTCCACAGATCCAATCAACCGGGAAAGAGAAAAGGAGCTAGATGATGTAGCAATAGCAGAATTCAGAAGCAAATGGGATGCAACCGTTGAGTACACAGAGAGGGAGGCCAACAACATGAACATAATGATTGAAGGGGTTGTGGCAATCGGAAAGGAAGGCGGTTACGACCTAATCGTGGTCGGAAAGGGTCGGGTTCCATCGAGCATGGTGGCGAAACTAGCTGACCGAGCAGCAGAGCATGCCGAGCTGGGACCAGTCGGGGACATATTGGCTAGCTCCGGCAGGGGAATAGTATCTTCAATACTAGTAATTCAACAACATGAAGGAGGTGCTCATACCGAAGAAACTCCAGTTTTGAATAAGCAGCCTTTGTCAATCGATGGAACTTCAAGTCATGTATAA 2511 56.67 MSVNITSIKTASNGVWQGDNPLDFAFPLLILQSVLILLLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKAYLHRIFPQWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGRRAFGIALAGISVPFLSGIGVAFILRKTIDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGTEGGAQKSPLVSVWVLLSGAGFVVFMMVVTRPGMKWVARRCSYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTVPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIRGGRAWGLLALVISTACAGKILATFVAAMAFLMPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTRTHRKLRDLAADDSNSDDELRILACLHSSGNVPSLISLTESTRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKGEWHDQMAGAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRMVGGEEENVGHGWRVVNQRVLKSAPCSVAVLVDRGFGANGSQTPGPGSLVAVGQRICVVFFGGPDDREALELGGRMAEHPAVKVTVVRFRPSSSDGVEGSNVILRPLHSKSGDNHYSFSTDPINREREKELDDVAIAEFRSKWDATVEYTEREANNMNIMIEGVVAIGKEGGYDLIVVGKGRVPSSMVAKLADRAAEHAELGPVGDILASSGRGIVSSILVIQQHEGGAHTEETPVLNKQPLSIDGTSSHV 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41782541 41787746 - Lag0012513.1 Lac1g2021 595592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2021 836 MobiDBLite consensus disorder prediction 812 836 - -
Lac1g2021 836 MobiDBLite consensus disorder prediction 821 836 - -
Lac1g2021 836 Gene3D - 28 437 IPR038770 -
Lac1g2021 836 FunFam Cation/H(+) antiporter 15 28 438 - -
Lac1g2021 836 Gene3D - 455 789 - -
Lac1g2021 836 Pfam Sodium/hydrogen exchanger family 38 428 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lac1g2021 836 PANTHER CATION/H + ANTIPORTER 9 814 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2011 Lac-Chr1:41695211 Lac1g2021 Lac-Chr1:41782541 5.10E-239 dispersed
Lac1g2021 Lac-Chr1:41782541 Lac1g2053 Lac-Chr1:42096130 0.00E+00 dispersed
Lac1g2021 Lac-Chr1:41782541 Lac7g2881 Lac-Chr7:47919347 3.60E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2021 K26731 - csv:101207589 1399.8