Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2032 | ATGGTCTTTCCCTCCATCCCATCTAATTATCTTGATCCAACAACCCATCAATGGCAACAGCAGCAGCAACAGCAAACAGGTGGAAGCCATCAATCCGGCAGTATGATCGGAGGTGGCAGTTTTCAGCTGGTGTCGCCGCCGCGGGCGCCGCCGCAAGTGCGGCCAGGGTCGATGGCGGATCGGGCCCGAATGGCGAACCTGCCGGTGCCGGAGACGGCGCTGAAGTGCCCAAGATGTGAATCGACGAACACAAAGTTTTGTTACTTCAACAACTATAGCCTGTCTCAGCCCCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGCGGCGCCCTCAGAAGCGTCCCCGTCGGCGGCGGCTACCGCCGGAATAATAAAAGAACTAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGCCAACAATCTACTACTACTGCAGCTGGAGAAGCAATGAGATTAAATTATAATGCCATTTCCACACCAAATGAAGGAGCTGGGGATTCAACTCATCCCATTGGGATAGCCAACTTCTTAGGGTTTGATCAAATTCAATGGCGGCCACAGCTTCAGCTTCACCAAATGCAACCGTCGCCGTTGCTCGCAAATTCTTCGGCTCGGTTGCTCGGAAATAATGGCATCGACGCATCGTCGAGCTATAACATCGTCGGGCAGATTCAGAAGAAGATGGAGACGACGAAAATGGAGGAAGATGGGCAACAACAGGTAAATGTGGGAAAGCCATTTTGGGGAGTTGTTGCAGGAAGTGATCGCCATTATTGGAGTGGCTTTAATCCTTCATCTTCTTCCCATCATTCACAAGTATGA | 834 | 51.68 | MVFPSIPSNYLDPTTHQWQQQQQQQTGGSHQSGSMIGGGSFQLVSPPRAPPQVRPGSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQQSTTTAAGEAMRLNYNAISTPNEGAGDSTHPIGIANFLGFDQIQWRPQLQLHQMQPSPLLANSSARLLGNNGIDASSSYNIVGQIQKKMETTKMEEDGQQQVNVGKPFWGVVAGSDRHYWSGFNPSSSSHHSQV | 277 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 41895287 | 41896844 | + | Lag0012524.1 | Lac1g2032 | 595603 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2032 | 277 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 58 | 203 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac1g2032 | 277 | MobiDBLite | consensus disorder prediction | 119 | 147 | - | - | |
| Lac1g2032 | 277 | MobiDBLite | consensus disorder prediction | 12 | 39 | - | - | |
| Lac1g2032 | 277 | MobiDBLite | consensus disorder prediction | 132 | 147 | - | - | |
| Lac1g2032 | 277 | MobiDBLite | consensus disorder prediction | 12 | 56 | - | - | |
| Lac1g2032 | 277 | ProSiteProfiles | Zinc finger Dof-type profile. | 74 | 128 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lac1g2032 | 277 | Pfam | Dof domain, zinc finger | 73 | 128 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lac1g2032 | 277 | ProSitePatterns | Zinc finger Dof-type signature. | 76 | 112 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g2032 | Lac-Chr1:41895287 | Lac7g2704 | Lac-Chr7:46109159 | 5.70E-38 | dispersed | |
| Lac1g2032 | Lac-Chr1:41895287 | Lac13g0982 | Lac-Chr13:8175176 | 5.90E-35 | wgd | |
| Lac1g2032 | Lac-Chr1:41895287 | Lac8g2507 | Lac-Chr8:42922708 | 5.30E-36 | wgd | |
| Lac1g2032 | Lac-Chr1:41895287 | Lac9g2483 | Lac-Chr9:43664546 | 1.30E-34 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23262 | PF02701 | zf-Dof | 3.80E-31 | No_clan | Lac | TF |
Pathway information