Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2032 ATGGTCTTTCCCTCCATCCCATCTAATTATCTTGATCCAACAACCCATCAATGGCAACAGCAGCAGCAACAGCAAACAGGTGGAAGCCATCAATCCGGCAGTATGATCGGAGGTGGCAGTTTTCAGCTGGTGTCGCCGCCGCGGGCGCCGCCGCAAGTGCGGCCAGGGTCGATGGCGGATCGGGCCCGAATGGCGAACCTGCCGGTGCCGGAGACGGCGCTGAAGTGCCCAAGATGTGAATCGACGAACACAAAGTTTTGTTACTTCAACAACTATAGCCTGTCTCAGCCCCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGCGGCGCCCTCAGAAGCGTCCCCGTCGGCGGCGGCTACCGCCGGAATAATAAAAGAACTAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGCCAACAATCTACTACTACTGCAGCTGGAGAAGCAATGAGATTAAATTATAATGCCATTTCCACACCAAATGAAGGAGCTGGGGATTCAACTCATCCCATTGGGATAGCCAACTTCTTAGGGTTTGATCAAATTCAATGGCGGCCACAGCTTCAGCTTCACCAAATGCAACCGTCGCCGTTGCTCGCAAATTCTTCGGCTCGGTTGCTCGGAAATAATGGCATCGACGCATCGTCGAGCTATAACATCGTCGGGCAGATTCAGAAGAAGATGGAGACGACGAAAATGGAGGAAGATGGGCAACAACAGGTAAATGTGGGAAAGCCATTTTGGGGAGTTGTTGCAGGAAGTGATCGCCATTATTGGAGTGGCTTTAATCCTTCATCTTCTTCCCATCATTCACAAGTATGA 834 51.68 MVFPSIPSNYLDPTTHQWQQQQQQQTGGSHQSGSMIGGGSFQLVSPPRAPPQVRPGSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQQSTTTAAGEAMRLNYNAISTPNEGAGDSTHPIGIANFLGFDQIQWRPQLQLHQMQPSPLLANSSARLLGNNGIDASSSYNIVGQIQKKMETTKMEEDGQQQVNVGKPFWGVVAGSDRHYWSGFNPSSSSHHSQV 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41895287 41896844 + Lag0012524.1 Lac1g2032 595603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2032 277 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 58 203 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2032 277 MobiDBLite consensus disorder prediction 119 147 - -
Lac1g2032 277 MobiDBLite consensus disorder prediction 12 39 - -
Lac1g2032 277 MobiDBLite consensus disorder prediction 132 147 - -
Lac1g2032 277 MobiDBLite consensus disorder prediction 12 56 - -
Lac1g2032 277 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2032 277 Pfam Dof domain, zinc finger 73 128 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2032 277 ProSitePatterns Zinc finger Dof-type signature. 76 112 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2032 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2032 Lac-Chr1:41895287 Lac7g2704 Lac-Chr7:46109159 5.70E-38 dispersed
Lac1g2032 Lac-Chr1:41895287 Lac13g0982 Lac-Chr13:8175176 5.90E-35 wgd
Lac1g2032 Lac-Chr1:41895287 Lac8g2507 Lac-Chr8:42922708 5.30E-36 wgd
Lac1g2032 Lac-Chr1:41895287 Lac9g2483 Lac-Chr9:43664546 1.30E-34 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT1G29160 52.5 1.6e-41 166.8
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.1e-39 160.6
Lac8g2507 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 66.7 6.8e-38 155.6
Lac7g2704 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.4e-37 152.9
Lac3g0612 . 115 466 C2C2-Dof Transcription Factor Family AT3G47500 53.1 2.2e-87 320.5
Lac8g0724 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.3 5.0e-76 282.7
Lac1g2524 . 1 149 C2C2-Dof Transcription Factor Family AT5G66940 56.3 2.7e-38 156.4
Lac7g2704 . 66 141 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.8e-38 157.1
Lac1g2032 . 53 126 C2C2-Dof Transcription Factor Family AT5G02460 87.8 9.0e-37 152.1
Lac10g3099 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.9e-37 153.7
Lac3g0537 . 29 325 C2C2-Dof Transcription Factor Family AT5G60850 52.9 2.4e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012147 0 0 1 0 0 1 2 1 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23262 PF02701 zf-Dof 3.80E-31 No_clan Lac TF