Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2042 | ATGGCAGAGAACGAGGACATTCAGCCACTCGTCTGCGATAATGGAACAGGAATGGTCAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCTCGCCATACAGGTGTTATGGTTGGAATGGGACAGAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGAGGTATTTTGACTCTCAAATACCCAATTGAGCACGGAATTGTTAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAACGAGCTTCGTGTTGCTCCCGAAGAACATCCGGTTCTCCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAAGGATATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGCCGTGACTTGACTGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTACTCATTTACCACCTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCCTACATTGCCCTTGACTTTGAGCAAGAATTAGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGTTATGAGTTGCCTGATGGTCAGGTGATCACCATCGGCGCTGAGCGTTTCCGATGCCCAGAAGTCCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCCGGTATTCATGAGACCACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCACGGCGTTGGCTCCAAGCAGCATGAAGATCAAGGTGGTTGCGCCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGGCGAGCGTTTATTTTCAAAGCGATTTCCTTCTCATCACAATGCACTTTATGTTCGATGTAGTAGAGTCTCTAACTTTGATATTTGGCTTGTTTAAATGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAGTGCTTCTAATCGCAAGCAAACACGTGTCCATTTCGGTACTGGTTTTACCTGA | 1278 | 46.95 | MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDFEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQASVYFQSDFLLITMHFMFDVVESLTLIFGLFKCRCGLPRLSMMSLALQLSTGSASNRKQTRVHFGTGFT | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 41970900 | 41972506 | + | Lag0012534.1 | Lac1g2042 | 595613 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2042 | 425 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
Lac1g2042 | 425 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
Lac1g2042 | 425 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
Lac1g2042 | 425 | Pfam | Actin | 5 | 359 | IPR004000 | - | |
Lac1g2042 | 425 | FunFam | Actin, alpha skeletal muscle | 3 | 169 | - | - | |
Lac1g2042 | 425 | FunFam | Major actin | 260 | 340 | - | - | |
Lac1g2042 | 425 | PANTHER | ACTIN | 8 | 356 | IPR004000 | GO:0005737(PANTHER) | |
Lac1g2042 | 425 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
Lac1g2042 | 425 | SUPERFAMILY | Actin-like ATPase domain | 149 | 359 | IPR043129 | - | |
Lac1g2042 | 425 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
Lac1g2042 | 425 | SMART | actin_3 | 7 | 374 | IPR004000 | - | |
Lac1g2042 | 425 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
Lac1g2042 | 425 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
Lac1g2042 | 425 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
Lac1g2042 | 425 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
Lac1g2042 | 425 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
Lac1g2042 | 425 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
Lac1g2042 | 425 | FunFam | Actin, muscle | 182 | 273 | - | - | |
Lac1g2042 | 425 | Gene3D | - | 10 | 359 | - | - | |
Lac1g2042 | 425 | Gene3D | - | 140 | 340 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0112 | Lac-Chr13:769239 | Lac1g2042 | Lac-Chr1:41970900 | 3.70E-55 | dispersed | |
Lac1g2042 | Lac-Chr1:41970900 | Lac9g0272 | Lac-Chr9:4360476 | 8.70E-131 | dispersed | |
Lac1g2042 | Lac-Chr1:41970900 | Lac1g2407 | Lac-Chr1:45486567 | 4.00E-200 | wgd | |
Lac1g2042 | Lac-Chr1:41970900 | Lac13g0981 | Lac-Chr13:8164917 | 1.20E-156 | wgd | |
Lac1g2042 | Lac-Chr1:41970900 | Lac8g2518 | Lac-Chr8:42999092 | 5.70E-191 | wgd | |
Lac1g2042 | Lac-Chr1:41970900 | Lac9g2477 | Lac-Chr9:43622271 | 1.90E-186 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2042 | K10355 | - | csv:101214247 | 722.62 |