Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2042 ATGGCAGAGAACGAGGACATTCAGCCACTCGTCTGCGATAATGGAACAGGAATGGTCAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCTCGCCATACAGGTGTTATGGTTGGAATGGGACAGAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGAGGTATTTTGACTCTCAAATACCCAATTGAGCACGGAATTGTTAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAACGAGCTTCGTGTTGCTCCCGAAGAACATCCGGTTCTCCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAAGGATATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGCCGTGACTTGACTGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTACTCATTTACCACCTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCCTACATTGCCCTTGACTTTGAGCAAGAATTAGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGTTATGAGTTGCCTGATGGTCAGGTGATCACCATCGGCGCTGAGCGTTTCCGATGCCCAGAAGTCCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCCGGTATTCATGAGACCACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCACGGCGTTGGCTCCAAGCAGCATGAAGATCAAGGTGGTTGCGCCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGGCGAGCGTTTATTTTCAAAGCGATTTCCTTCTCATCACAATGCACTTTATGTTCGATGTAGTAGAGTCTCTAACTTTGATATTTGGCTTGTTTAAATGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAGTGCTTCTAATCGCAAGCAAACACGTGTCCATTTCGGTACTGGTTTTACCTGA 1278 46.95 MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDFEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQASVYFQSDFLLITMHFMFDVVESLTLIFGLFKCRCGLPRLSMMSLALQLSTGSASNRKQTRVHFGTGFT 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41970900 41972506 + Lag0012534.1 Lac1g2042 595613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2042 425 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lac1g2042 425 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lac1g2042 425 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lac1g2042 425 Pfam Actin 5 359 IPR004000 -
Lac1g2042 425 FunFam Actin, alpha skeletal muscle 3 169 - -
Lac1g2042 425 FunFam Major actin 260 340 - -
Lac1g2042 425 PANTHER ACTIN 8 356 IPR004000 GO:0005737(PANTHER)
Lac1g2042 425 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lac1g2042 425 SUPERFAMILY Actin-like ATPase domain 149 359 IPR043129 -
Lac1g2042 425 Gene3D Actin; Chain A, domain 4 182 273 - -
Lac1g2042 425 SMART actin_3 7 374 IPR004000 -
Lac1g2042 425 PRINTS Actin signature 238 254 IPR004000 -
Lac1g2042 425 PRINTS Actin signature 63 85 IPR004000 -
Lac1g2042 425 PRINTS Actin signature 142 161 IPR004000 -
Lac1g2042 425 PRINTS Actin signature 28 37 IPR004000 -
Lac1g2042 425 PRINTS Actin signature 117 130 IPR004000 -
Lac1g2042 425 PRINTS Actin signature 51 62 IPR004000 -
Lac1g2042 425 FunFam Actin, muscle 182 273 - -
Lac1g2042 425 Gene3D - 10 359 - -
Lac1g2042 425 Gene3D - 140 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2042 K10355 - - csv:101214247 722.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0112 Lac-Chr13:769239 Lac1g2042 Lac-Chr1:41970900 3.70E-55 dispersed
Lac1g2042 Lac-Chr1:41970900 Lac9g0272 Lac-Chr9:4360476 8.70E-131 dispersed
Lac1g2042 Lac-Chr1:41970900 Lac1g2407 Lac-Chr1:45486567 4.00E-200 wgd
Lac1g2042 Lac-Chr1:41970900 Lac13g0981 Lac-Chr13:8164917 1.20E-156 wgd
Lac1g2042 Lac-Chr1:41970900 Lac8g2518 Lac-Chr8:42999092 5.70E-191 wgd
Lac1g2042 Lac-Chr1:41970900 Lac9g2477 Lac-Chr9:43622271 1.90E-186 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 9.6e-214 740.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT2G37620 95.5 3.6e-213 738.0
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 3.1e-212 734.9
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT2G37620 93.1 1.5e-203 706.1
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT2G37620 96.1 1.3e-199 693.0
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT2G37620 86.7 5.1e-199 691.0
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT2G37620 86.6 7.7e-155 544.3
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT2G37620 95.0 2.0e-131 466.5
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 1.3e-213 739.6
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.3e-210 729.6
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT5G59370 94.4 4.9e-210 727.6
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT5G59370 94.2 4.8e-205 711.1
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-198 689.1
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT5G59370 87.2 3.3e-198 688.3
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT5G59370 87.5 2.0e-155 546.2
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT5G59370 94.2 1.3e-130 463.8
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.6e-213 738.0
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.8e-211 730.7
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G46520 94.7 2.2e-210 728.8
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G46520 94.4 2.1e-205 712.2
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G46520 96.1 5.6e-198 687.6
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G46520 86.9 9.6e-198 686.8
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G46520 87.9 9.1e-156 547.4
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT3G46520 94.6 4.6e-131 465.3
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 6.6e-215 743.8
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 4.0e-212 734.6
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G12110 93.4 2.4e-204 708.8
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G12110 96.3 1.0e-199 693.3
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G12110 87.2 1.8e-199 692.6
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G12110 87.2 7.0e-156 547.7
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT3G12110 94.2 2.3e-130 463.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G18780 93.1 7.1e-209 723.8
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.7e-207 719.2
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.3e-207 718.8
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G18780 89.7 7.9e-200 693.7
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G18780 92.4 2.9e-194 675.2
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G18780 82.2 7.9e-192 667.2
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G18780 83.8 4.0e-151 531.9
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT3G18780 90.8 2.3e-127 453.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT1G49240 93.4 2.4e-209 725.3
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 6.0e-208 720.7
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 7.9e-208 720.3
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT1G49240 89.9 2.7e-200 695.3
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT1G49240 92.1 6.5e-194 674.1
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT1G49240 82.5 2.7e-192 668.7
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT1G49240 84.1 1.4e-151 533.5
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT1G49240 91.3 8.0e-128 454.5
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.3e-214 741.1
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 8.1e-213 736.9
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT5G09810 92.8 4.5e-203 704.5
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT5G09810 96.1 5.1e-199 691.0
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT5G09810 86.4 4.3e-198 688.0
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT5G09810 86.6 7.7e-155 544.3
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT5G09810 97.5 2.9e-133 472.6
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 1.3e-56 216.5
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT2G19760 77.1 1.7e-56 216.1
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT2G19760 74.0 6.4e-56 214.2
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT2G19760 72.5 2.3e-53 205.7
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 5.1e-53 204.5
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 2.2e-56 215.7
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT4G29350 77.9 2.9e-56 215.3
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 2.4e-55 212.2
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 8.6e-53 203.8
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT4G29350 71.8 1.9e-52 202.6
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 2.2e-64 242.3
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT4G29340 75.4 3.1e-58 221.9
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT4G29340 75.4 4.5e-57 218.0
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT4G29340 71.6 2.6e-52 202.2
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT4G29340 69.4 7.5e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276