Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2042 ATGGCAGAGAACGAGGACATTCAGCCACTCGTCTGCGATAATGGAACAGGAATGGTCAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCTCGCCATACAGGTGTTATGGTTGGAATGGGACAGAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGAGGTATTTTGACTCTCAAATACCCAATTGAGCACGGAATTGTTAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAACGAGCTTCGTGTTGCTCCCGAAGAACATCCGGTTCTCCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAAGGATATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGCCGTGACTTGACTGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTACTCATTTACCACCTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCCTACATTGCCCTTGACTTTGAGCAAGAATTAGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGTTATGAGTTGCCTGATGGTCAGGTGATCACCATCGGCGCTGAGCGTTTCCGATGCCCAGAAGTCCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCCGGTATTCATGAGACCACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCACGGCGTTGGCTCCAAGCAGCATGAAGATCAAGGTGGTTGCGCCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGGCGAGCGTTTATTTTCAAAGCGATTTCCTTCTCATCACAATGCACTTTATGTTCGATGTAGTAGAGTCTCTAACTTTGATATTTGGCTTGTTTAAATGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAGTGCTTCTAATCGCAAGCAAACACGTGTCCATTTCGGTACTGGTTTTACCTGA 1278 46.95 MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDFEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQASVYFQSDFLLITMHFMFDVVESLTLIFGLFKCRCGLPRLSMMSLALQLSTGSASNRKQTRVHFGTGFT 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41970900 41972506 + Lag0012534.1 Lac1g2042 595613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2042 425 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lac1g2042 425 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lac1g2042 425 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lac1g2042 425 Pfam Actin 5 359 IPR004000 -
Lac1g2042 425 FunFam Actin, alpha skeletal muscle 3 169 - -
Lac1g2042 425 FunFam Major actin 260 340 - -
Lac1g2042 425 PANTHER ACTIN 8 356 IPR004000 GO:0005737(PANTHER)
Lac1g2042 425 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lac1g2042 425 SUPERFAMILY Actin-like ATPase domain 149 359 IPR043129 -
Lac1g2042 425 Gene3D Actin; Chain A, domain 4 182 273 - -
Lac1g2042 425 SMART actin_3 7 374 IPR004000 -
Lac1g2042 425 PRINTS Actin signature 238 254 IPR004000 -
Lac1g2042 425 PRINTS Actin signature 63 85 IPR004000 -
Lac1g2042 425 PRINTS Actin signature 142 161 IPR004000 -
Lac1g2042 425 PRINTS Actin signature 28 37 IPR004000 -
Lac1g2042 425 PRINTS Actin signature 117 130 IPR004000 -
Lac1g2042 425 PRINTS Actin signature 51 62 IPR004000 -
Lac1g2042 425 FunFam Actin, muscle 182 273 - -
Lac1g2042 425 Gene3D - 10 359 - -
Lac1g2042 425 Gene3D - 140 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0112 Lac-Chr13:769239 Lac1g2042 Lac-Chr1:41970900 3.70E-55 dispersed
Lac1g2042 Lac-Chr1:41970900 Lac9g0272 Lac-Chr9:4360476 8.70E-131 dispersed
Lac1g2042 Lac-Chr1:41970900 Lac1g2407 Lac-Chr1:45486567 4.00E-200 wgd
Lac1g2042 Lac-Chr1:41970900 Lac13g0981 Lac-Chr13:8164917 1.20E-156 wgd
Lac1g2042 Lac-Chr1:41970900 Lac8g2518 Lac-Chr8:42999092 5.70E-191 wgd
Lac1g2042 Lac-Chr1:41970900 Lac9g2477 Lac-Chr9:43622271 1.90E-186 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2042 K10355 - csv:101214247 722.62