Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2045 ATGGGAAATCGAATTGGGAAAATTGGCCACTGCTTCGCCGGCGACGGCGATATCTCCCGCCGGTATGATCCCGCCGACTATACCGCCGACCCCAACGACGGCGGCTTCGGCCACTCCTTCTACTACCTTCCACCCGACCCACATACTTTCTCCTCCTCCAAAGATTTCTCCGAAGACTACATCTCACCGGCGACGATTTTCCGGTCGATTTCCGGCGCCTCTGTAAGCGCCAACGTCTCAACGCCGCTCTCCACTTCTCTCGTCGATCTTTATCCTTACAGCACCACGTTTGATCGGGCTGCCGCCTTTGATTGTTCGAATTCCTTCGCCTCCGTGCCGCTGCAGCCGGTGCCCCGCCACTCGGTGTCGGGTAATTCCGGCGCTTCGGGTCCGATCGAGAGAGGGTTCTTGTCCGGACCGTTGGCTGCCCGGAGCTTCGAATCGGGTCCGATTGATCGAGGGGTTTATTCCGGCCCGATTGAGAAGGGCGGCGGACCGGAGAAATTGCAGAGGAGCTTCTCCCACGGCGGCGTTGGAGATAGACAACAACCCAAATCGAAAAGAAGAAGAAGTCTCATTCAGATTCTGAAGAGAGCCATATCCAAAACCATTTCTCGAAACCAGAAGGCTGTGAGTTCGAGAGTGAGAGAATCGGAATCGTACAAACACAATGAAAATGCAGCTGCAGCTGCAACTCAGACTCAGAGCAGTGTTCATTTGAGCAGCCACGCGAGCTTGCCGCAGGAAGACGATGGCGATTACTTTCTCGGCGGTCAGAGCGTACAGTGGGCACAGGGGAAGGCCGGTGAGGATAGAGTTCACGTGGTCATATCGGAGGATAATGGTTGGGTTTTCGTTGGAATTTACGATGGATTCAACGGCCCTGATGCTCCTGATTACTTACTCGCTAATCTCTACACTGCCGTTCTTAAAGAACTCAAGGGCTTGATTTGGAATGATAAGTTTGATTCAACTGCAACTTCGTCTTCCATGAACTCATCAAACTCTGCTTCAATTGAGGAAGATGATGGAACGACCCACATGAAGAATCAAGGGAATGATCATCAATCTACACAGGTCGCAAATGGGATTGTGAATTTGGAGGCCGATTCCGCCAGGAAAAGAGACAGAGTTTATAATACAAACTATAGGACGAGTCAGCTGATGAAGAAGGCTGATCAGAATCCTAAGAATTGGAAATGTGAATGGGAAAGGGAAAGATTAGAATTTGATGGGAAGTTGAACAATAGACATTTAGATCATCACCAAATATGGGATGAATCAACAGCAATCAATCATTCTGAAGTGTTGAGTGCTCTGTCTCAAGCTTTGAGAAAGACAGAGGAAGCATATCTGCAGAATGCAGACAAGATGGTTACAAGAAATCCTGAGCTAGCTCTTATGGGCTCTTGTGTTTTGGTTATGTTGATGAGAGGAGAAGATGTCTACTTGATGAATGTAGGAGACAGCCGCGCAATTGTAGCGCAGCAACTCGAACCGGAATTTGGGATTGGAAGAATCAATGAAGGAACACTACGAGCGTTCGAATCCTCAAATGGAGTAGAGTTTGAGAGATTTACAACCTTGGCTTCTCATCAGCTTACGATGGACCACAGCACGTACACAGAAGAGGAAGTTCAAAGGATCAAGAATGCTCATCCCGATGACACTTCTGCAATTATGAATGACAGGGTGAAAGGTTATTTGAAAATCACACGGGCGTTCGGAGCTGGCTTTCTCAAACAGCCAAAATGGAATGATGCATTGCTAGAGATGTTCAGAATAGACTATGTGGGAAATTCACCTTACATCACCTGTGATCCAACATTGTGCCATTATAAACTCAGCCCAACAGACAGATTCTTGGTATTGTCCTCTGATGGACTCTACCAATACTTCACCAATGAAGAAGCTGTTGCTCATGTAGAGTCCTTCATTGCTTCTTTTCCTGAAGGAGATCCTGCTCAAAATCTCATTGAAGAAGTATTGTTCCGAGCAGCGAAAAAATACGGAATGGACTTCCATGAGCTGCTTGATATCCCACAAGGGGAGCGGCGGAAGTACCATGACGACGTTTCGGTAATCATCATTTCGTTCGAAGGAAGAATTTGGCATTCATTGATGTAA 2127 47.63 MGNRIGKIGHCFAGDGDISRRYDPADYTADPNDGGFGHSFYYLPPDPHTFSSSKDFSEDYISPATIFRSISGASVSANVSTPLSTSLVDLYPYSTTFDRAAAFDCSNSFASVPLQPVPRHSVSGNSGASGPIERGFLSGPLAARSFESGPIDRGVYSGPIEKGGGPEKLQRSFSHGGVGDRQQPKSKRRRSLIQILKRAISKTISRNQKAVSSRVRESESYKHNENAAAAATQTQSSVHLSSHASLPQEDDGDYFLGGQSVQWAQGKAGEDRVHVVISEDNGWVFVGIYDGFNGPDAPDYLLANLYTAVLKELKGLIWNDKFDSTATSSSMNSSNSASIEEDDGTTHMKNQGNDHQSTQVANGIVNLEADSARKRDRVYNTNYRTSQLMKKADQNPKNWKCEWERERLEFDGKLNNRHLDHHQIWDESTAINHSEVLSALSQALRKTEEAYLQNADKMVTRNPELALMGSCVLVMLMRGEDVYLMNVGDSRAIVAQQLEPEFGIGRINEGTLRAFESSNGVEFERFTTLASHQLTMDHSTYTEEEVQRIKNAHPDDTSAIMNDRVKGYLKITRAFGAGFLKQPKWNDALLEMFRIDYVGNSPYITCDPTLCHYKLSPTDRFLVLSSDGLYQYFTNEEAVAHVESFIASFPEGDPAQNLIEEVLFRAAKKYGMDFHELLDIPQGERRKYHDDVSVIIISFEGRIWHSLM 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41990204 41992738 - Lag0012537.1 Lac1g2045 595616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2045 708 FunFam Protein phosphatase 2C 29 360 706 - -
Lac1g2045 708 ProSiteProfiles PPM-type phosphatase domain profile. 255 699 IPR001932 -
Lac1g2045 708 Gene3D - 223 704 IPR036457 -
Lac1g2045 708 MobiDBLite consensus disorder prediction 325 341 - -
Lac1g2045 708 SUPERFAMILY PP2C-like 266 700 IPR036457 -
Lac1g2045 708 MobiDBLite consensus disorder prediction 225 244 - -
Lac1g2045 708 CDD PP2Cc 410 699 IPR001932 -
Lac1g2045 708 MobiDBLite consensus disorder prediction 325 360 - -
Lac1g2045 708 PANTHER PROTEIN PHOSPHATASE 2C 233 699 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lac1g2045 708 Pfam Protein phosphatase 2C 417 670 IPR001932 -
Lac1g2045 708 MobiDBLite consensus disorder prediction 207 251 - -
Lac1g2045 708 SMART PP2C_4 243 697 IPR001932 -
Lac1g2045 708 MobiDBLite consensus disorder prediction 153 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2045 Lac-Chr1:41990204 Lac5g0280 Lac-Chr5:2730965 2.00E-116 dispersed
Lac7g0877 Lac-Chr7:7201844 Lac1g2045 Lac-Chr1:41990204 1.60E-65 transposed
Lac1g2045 Lac-Chr1:41990204 Lac9g2475 Lac-Chr9:43607935 9.90E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2045 - - - 0.0