Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2050 ATGGCTTCTCTCTCTCTCCTCTGCATTTTCGCCTCTCTCTCCTCCCTCTTCCTCCTCTCCCACGCCAGAATCCCCGGTGTCTACTCCGGCGGCCCCTGGCAGGACGCTCACGCCACCTTCTACGGCGGCAGCGACGCCTCCGGAACCATGGGCGGTGCTTGTGGGTACGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACGGCGGCGCTGAGTACCGCTCTCTTCAACAATGGCTTTAGCTGCGGTGCCTGCTTCGAGATCAAGTGCGCTAATGACCCCAAGTGGTGCCATCCCGGTAGCCCTTCCATTTTCATTACGGCCACCAATTTCTGTCCCCCGAATTTCGCTCTTCCCAACGACAATGGCGGCTGGTGTAACCCTCCTCGCACTCATTTCGACCTCGCCATGCCCATGTTCCTAAAGATCGCCGAGTACCGCGCCGGAATCGTCCCCGTCGCTTACCGCCGAGTGGCATGTAGGAAACAAGGGGGGATCAGGTTCACAATCAACGGCTTCCGTTACTTCAACTTGGTTTTAATCACGAACGTGGCGGGTGCAGGGGATATCGTGAGGGTGAGCGTGAAAGGATCGAAGACAGCGTGGATGAGCATGAGCCGGAACTGGGGGCAAAATTGGCAATCCAACGCGGTTTTGGTGGGCCAGGCCCTCTCGTTCCGGGTCACGGGCAGTGACCGTCGTACCTCAACTTCATGGAACGTGGCACCTTCTAATTGGCAGTTCGGTCAGACCTTCACGGGAAAGAATTTCCGCGTCTGA 780 57.95 MASLSLLCIFASLSSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCANDPKWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSKTAWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42040877 42042039 - Lag0012542.1 Lac1g2050 595621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2050 259 FunFam Expansin 22 161 - -
Lac1g2050 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Lac1g2050 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Lac1g2050 259 Gene3D - 165 257 IPR036749 -
Lac1g2050 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Lac1g2050 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Lac1g2050 259 CDD DPBB_EXPA_N 32 160 - -
Lac1g2050 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Lac1g2050 259 Gene3D - 21 161 IPR036908 -
Lac1g2050 259 FunFam Expansin 165 257 - -
Lac1g2050 259 PANTHER EXPANSIN-A15 14 257 IPR002963 GO:0009664(InterPro)
Lac1g2050 259 SMART dpbb_1 68 155 IPR007112 -
Lac1g2050 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Lac1g2050 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Lac1g2050 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Lac1g2050 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Lac1g2050 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Lac1g2050 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Lac1g2050 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Lac1g2050 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
Lac1g2050 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Lac1g2050 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Lac1g2050 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Lac1g2050 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Lac1g2050 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Lac1g2050 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Lac1g2050 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Lac1g2050 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0995 Lac-Chr13:8319658 Lac1g2050 Lac-Chr1:42040877 1.20E-135 dispersed
Lac1g2050 Lac-Chr1:42040877 Lac7g2733 Lac-Chr7:46407114 9.40E-136 dispersed
Lac1g2180 Lac-Chr1:43229203 Lac1g2050 Lac-Chr1:42040877 6.30E-90 transposed
Lac5g0571 Lac-Chr5:6438462 Lac1g2050 Lac-Chr1:42040877 2.80E-79 transposed
Lac1g2050 Lac-Chr1:42040877 Lac8g2527 Lac-Chr8:43068512 7.40E-125 wgd
Lac1g2050 Lac-Chr1:42040877 Lac9g2465 Lac-Chr9:43539314 3.40E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2050 - - - 0.0