Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2053 ATGAGTGTGAATATAAGCGCTATCAAAACGGCGTCGGAAGGGGTGTGGCAAGGCGACAACCCACTGGATTTCGCCTTCCCTCTATTAATTGTTCAGTGCATTTTGATCCTCTTCGTCACTCGCTTCCTCACTTTCCTCCTCAAACCCCTCCGCCAGCCCAAAGTCACCGCCGAGATTCTCGGTGGGATTCTGCTCGGGCCCTCCGCTTCTGGTCGGAGCAAGCTGTTTTTGGATCGGATCTTCCCCCCATGGAGCACTCCCATTCTCGAATCCGTCGCCAGCATCGGCCTCCTCTTCTTCCTCTTCCTCGTCGGCCTCGAGCTCGATCTCTCCTCCCTTCGCCGCGGCGGAACCAAGGCTTTCGGCATAGCATTCGCCGGCATTTCCGCCACCTTCCTCGGCGGCGTCGGCGTCACCTTCGTCCTCAGAAACACCGTCGACGGTGCCGACCAGGTCGGCTACACCCAGTTCGTAGTCTTCATGGGCGTCGCTCTCTCCATCACCGCCTTCCCCGTTCTGGCTCGCATTCTCGCCGAGCTCAAACTCCTCACCACCCAAGTCGGAGAGACCGCCATGGCTGCTGCCGCCTTCAACGACGTCGCCGCTTGGATCCTCCTGGCTCTCGCCGTGGCCCTCGCCGGCGGGGCCGGCGACAACCCCTTGGTATCCGTGTGGGTCCTACTTTCGGGAGTTGGGTTCGTGGTTTTCATGATGGTAGCGATTCGGCCGGTGATGAAGCGGGTGGCCCGCCGGTTCGCCCCGGAGCAGAAGGCGGCGGAGGAGGCGTACATATGCGTGACGTTGGTGGGGGTTTTGATGGCGGGGCTGGCGACGGATTTCATTGGAATCCACTCGATCTTCGGGGGTTTCGTGTTCGGGCTGATGGTTCCGAAAGGGGGCAGATTCGCGGAGAGATTGATGGAGAGAATCGAAGATTTCGTGTCGGGTCTTCTTCTTCCTCTGTACTTCGCGTCGAGTGGGTTGAAGACAGACATAGGGAAGATTCGAGGGGGAAGGGCTTGGGGGTTGCTGGCGTTGCTGATATCCACGGCATGCGCAGGGAAGATCCTTGCGACGTTTCTTGTGTCCATGGCGTTTCTTATGTCCCCCAGAGACTCCCTCGCCTTGGGCCTTCTTATGAACACCAAAGGCTTGGTCGACCTCATCGTCCTCAACATCGGCAAGGACAAAAAGGTTTTGAACGATGAAGTATTTGCGCTATCGGTACTAATGGCGCTTTTCACCACTTTCATGACCACCCCTTCTTTGATCGCCATTTACAAGCCAGCCAGAGCCAGTGGGGCGTCCACCGCCACCCACCAAAAAAAACTACGTGATCAGCGCAAAGTGGAAGAGCTCCGAATCCTGGCCTGCGTCCATGGACCTGCAAATCTACCATCCTTAACAAGCTTGATCCACTTAACTCGAAGCAACAAACATTCTTCTTCTCTCAAGCTTTTCGCTATGCGCCTTGTCGAGCTCACCGAGCGCTCCTCCTCGATCATCATGGTCCAACGAGCTCGCAAGAACGGATTCCCCTTCTTCACAAGGTTCCGCAGAGGCGAATGGCAGGACCAACTGATCGGAGCCTTTCAATGTCAATCCCACGCCCACTTGGGCCGGGTCAAGGTCCGACCCACCACCACCATCTCTTCCCTCTCAACCATGCACCAAGACATCTGCCACGTGGCTCAGGATAAGAGGGTCTCGCTCATCGTCCTGCCCTTCCACAATAGTTGGAGCAGCGAGGAGACTACGTGGATGAGCCATGGTTGGAGGCGGGTGAACCAGAGGGTGTTGGACAGTGCGCCGTGCTCGGTGGCGGTCCTTGTCGATCGTGGACTCGGGGCTAGTGGGGCCCAGCGGATTTGTGTTCTCTTTTTTGGTGGGCCCGACGACCGTGCGGCCCTCGAGTTGGGCCGACGAATGGCGGAGCATCCGACGGTGAAGCTGACGGTGGTCAGGTTCCACGTCATGCTCGTGGAGGTTAATAATAAACATGTCGTTTTGGAACCCATGCCTTCAGAATCCTACGCTGATCATGGCCGTGACGGTAATGCAAAACAGAAGCTGGATGACGACTTGGCAATGGTAGAGTTTAGAAGCAAATGTGGCGAATCGGTCGAGTACGTCGAGAGGGAGGCGAACGTCGACGACGACGACATTGTTGAAAGGGTGGTGGACATTGGACGAGAAGGCGGTTACGACCTAATTGTGGTCGGAAAAGGTCGGTTTCCATCGATCGTGGCGGTGAAATTAGCAGATCATCGAACGCAGCTGACCGAGCTCGGGCTAATCGGCGACATACTCGTGACCTCCCACGGGGGAGTACTGGCTTCACTACTGGTAGTTCAACAACATTGA 2364 56.77 MSVNISAIKTASEGVWQGDNPLDFAFPLLIVQCILILFVTRFLTFLLKPLRQPKVTAEILGGILLGPSASGRSKLFLDRIFPPWSTPILESVASIGLLFFLFLVGLELDLSSLRRGGTKAFGIAFAGISATFLGGVGVTFVLRNTVDGADQVGYTQFVVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGGAGDNPLVSVWVLLSGVGFVVFMMVAIRPVMKRVARRFAPEQKAAEEAYICVTLVGVLMAGLATDFIGIHSIFGGFVFGLMVPKGGRFAERLMERIEDFVSGLLLPLYFASSGLKTDIGKIRGGRAWGLLALLISTACAGKILATFLVSMAFLMSPRDSLALGLLMNTKGLVDLIVLNIGKDKKVLNDEVFALSVLMALFTTFMTTPSLIAIYKPARASGASTATHQKKLRDQRKVEELRILACVHGPANLPSLTSLIHLTRSNKHSSSLKLFAMRLVELTERSSSIIMVQRARKNGFPFFTRFRRGEWQDQLIGAFQCQSHAHLGRVKVRPTTTISSLSTMHQDICHVAQDKRVSLIVLPFHNSWSSEETTWMSHGWRRVNQRVLDSAPCSVAVLVDRGLGASGAQRICVLFFGGPDDRAALELGRRMAEHPTVKLTVVRFHVMLVEVNNKHVVLEPMPSESYADHGRDGNAKQKLDDDLAMVEFRSKCGESVEYVEREANVDDDDIVERVVDIGREGGYDLIVVGKGRFPSIVAVKLADHRTQLTELGLIGDILVTSHGGVLASLLVVQQH 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42096130 42099451 + Lag0012545.1 Lac1g2053 595624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2053 787 FunFam Cation/H(+) antiporter 15 28 433 - -
Lac1g2053 787 CDD USP_Like 622 741 - -
Lac1g2053 787 PANTHER CATION/H + ANTIPORTER 9 787 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lac1g2053 787 Gene3D - 495 750 - -
Lac1g2053 787 Gene3D - 28 434 IPR038770 -
Lac1g2053 787 Pfam Sodium/hydrogen exchanger family 36 423 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2053 K26731 - - csv:101207589 976.467
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2021 Lac-Chr1:41782541 Lac1g2053 Lac-Chr1:42096130 0.00E+00 dispersed
Lac1g2053 Lac-Chr1:42096130 Lac5g2191 Lac-Chr5:40501841 8.70E-193 dispersed
Lac1g2053 Lac-Chr1:42096130 Lac7g2881 Lac-Chr7:47919347 8.40E-87 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac9g0210 . 5 821 Antiporter Super Family AT2G13620 71.0 0.0e+00 1160.2
Lac1g2021 . 75 834 Antiporter Super Family AT3G53720 68.8 2.0e-290 995.7
Lac1g2053 . 76 787 Antiporter Super Family AT3G53720 59.6 1.4e-232 803.5
Lac5g2191 . 83 780 Antiporter Super Family AT3G53720 51.1 1.6e-186 650.6
Lac5g2193 . 94 793 Antiporter Super Family AT3G53720 50.2 6.1e-183 638.6
Lac1g2011 . 54 492 Antiporter Super Family AT3G53720 60.1 3.9e-137 486.5
Lac5g2191 . 1 780 Antiporter Super Family AT5G41610 69.7 6.9e-310 1060.4
Lac5g2192 . 1 774 Antiporter Super Family AT5G41610 69.2 1.1e-302 1036.6
Lac5g2193 . 13 804 Antiporter Super Family AT5G41610 66.9 6.4e-300 1027.3
Lac1g2021 . 8 812 Antiporter Super Family AT5G41610 52.0 2.3e-212 736.5
Lac5g2192 . 1 794 Antiporter Super Family AT4G23700 66.3 4.4e-296 1014.6
Lac5g2193 . 21 794 Antiporter Super Family AT4G23700 65.3 6.3e-287 984.2
Lac5g2191 . 9 796 Antiporter Super Family AT4G23700 62.5 2.4e-278 955.7
Lac5g2193 . 11 794 Antiporter Super Family AT3G17630 64.2 3.8e-276 948.3
Lac5g2192 . 2 772 Antiporter Super Family AT3G17630 64.7 1.2e-274 943.3
Lac5g2191 . 3 779 Antiporter Super Family AT3G17630 62.7 4.8e-271 931.4
Lac1g2021 . 2 816 Antiporter Super Family AT3G17630 51.7 1.2e-210 730.7
Lac1g2053 . 8 785 Antiporter Super Family AT3G17630 50.1 2.8e-186 649.8
Lac5g2192 . 11 777 Antiporter Super Family AT1G64170 59.4 2.3e-244 842.8
Lac5g2193 . 19 802 Antiporter Super Family AT1G64170 57.0 9.8e-240 827.4
Lac5g2191 . 1 784 Antiporter Super Family AT1G64170 56.1 4.4e-232 802.0
Lac9g0210 . 5 821 Antiporter Super Family AT2G13620 71.0 0.0e+00 1160.2
Lac5g2192 . 11 777 Antiporter Super Family AT1G64170 59.4 2.3e-244 842.8
Lac5g2193 . 19 802 Antiporter Super Family AT1G64170 57.0 9.8e-240 827.4
Lac5g2191 . 1 784 Antiporter Super Family AT1G64170 56.1 4.4e-232 802.0
Lac5g2192 . 1 794 Antiporter Super Family AT4G23700 66.3 4.4e-296 1014.6
Lac5g2193 . 21 794 Antiporter Super Family AT4G23700 65.3 6.3e-287 984.2
Lac5g2191 . 9 796 Antiporter Super Family AT4G23700 62.5 2.4e-278 955.7
Lac5g2191 . 1 780 Antiporter Super Family AT5G41610 69.7 6.9e-310 1060.4
Lac5g2192 . 1 774 Antiporter Super Family AT5G41610 69.2 1.1e-302 1036.6
Lac5g2193 . 13 804 Antiporter Super Family AT5G41610 66.9 6.4e-300 1027.3
Lac1g2021 . 8 812 Antiporter Super Family AT5G41610 52.0 2.3e-212 736.5
Lac5g2193 . 11 794 Antiporter Super Family AT3G17630 64.2 3.8e-276 948.3
Lac5g2192 . 2 772 Antiporter Super Family AT3G17630 64.7 1.2e-274 943.3
Lac5g2191 . 3 779 Antiporter Super Family AT3G17630 62.7 4.8e-271 931.4
Lac1g2021 . 2 816 Antiporter Super Family AT3G17630 51.7 1.2e-210 730.7
Lac1g2053 . 8 785 Antiporter Super Family AT3G17630 50.1 2.8e-186 649.8
Lac1g2021 . 75 834 Antiporter Super Family AT3G53720 68.8 2.0e-290 995.7
Lac1g2053 . 76 787 Antiporter Super Family AT3G53720 59.6 1.4e-232 803.5
Lac5g2191 . 83 780 Antiporter Super Family AT3G53720 51.1 1.6e-186 650.6
Lac5g2193 . 94 793 Antiporter Super Family AT3G53720 50.2 6.1e-183 638.6
Lac1g2011 . 54 492 Antiporter Super Family AT3G53720 60.1 3.9e-137 486.5
Lac4g2643 . 47 792 Antiporter Super Family AT3G52080 55.6 4.1e-238 822.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43