Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2053 ATGAGTGTGAATATAAGCGCTATCAAAACGGCGTCGGAAGGGGTGTGGCAAGGCGACAACCCACTGGATTTCGCCTTCCCTCTATTAATTGTTCAGTGCATTTTGATCCTCTTCGTCACTCGCTTCCTCACTTTCCTCCTCAAACCCCTCCGCCAGCCCAAAGTCACCGCCGAGATTCTCGGTGGGATTCTGCTCGGGCCCTCCGCTTCTGGTCGGAGCAAGCTGTTTTTGGATCGGATCTTCCCCCCATGGAGCACTCCCATTCTCGAATCCGTCGCCAGCATCGGCCTCCTCTTCTTCCTCTTCCTCGTCGGCCTCGAGCTCGATCTCTCCTCCCTTCGCCGCGGCGGAACCAAGGCTTTCGGCATAGCATTCGCCGGCATTTCCGCCACCTTCCTCGGCGGCGTCGGCGTCACCTTCGTCCTCAGAAACACCGTCGACGGTGCCGACCAGGTCGGCTACACCCAGTTCGTAGTCTTCATGGGCGTCGCTCTCTCCATCACCGCCTTCCCCGTTCTGGCTCGCATTCTCGCCGAGCTCAAACTCCTCACCACCCAAGTCGGAGAGACCGCCATGGCTGCTGCCGCCTTCAACGACGTCGCCGCTTGGATCCTCCTGGCTCTCGCCGTGGCCCTCGCCGGCGGGGCCGGCGACAACCCCTTGGTATCCGTGTGGGTCCTACTTTCGGGAGTTGGGTTCGTGGTTTTCATGATGGTAGCGATTCGGCCGGTGATGAAGCGGGTGGCCCGCCGGTTCGCCCCGGAGCAGAAGGCGGCGGAGGAGGCGTACATATGCGTGACGTTGGTGGGGGTTTTGATGGCGGGGCTGGCGACGGATTTCATTGGAATCCACTCGATCTTCGGGGGTTTCGTGTTCGGGCTGATGGTTCCGAAAGGGGGCAGATTCGCGGAGAGATTGATGGAGAGAATCGAAGATTTCGTGTCGGGTCTTCTTCTTCCTCTGTACTTCGCGTCGAGTGGGTTGAAGACAGACATAGGGAAGATTCGAGGGGGAAGGGCTTGGGGGTTGCTGGCGTTGCTGATATCCACGGCATGCGCAGGGAAGATCCTTGCGACGTTTCTTGTGTCCATGGCGTTTCTTATGTCCCCCAGAGACTCCCTCGCCTTGGGCCTTCTTATGAACACCAAAGGCTTGGTCGACCTCATCGTCCTCAACATCGGCAAGGACAAAAAGGTTTTGAACGATGAAGTATTTGCGCTATCGGTACTAATGGCGCTTTTCACCACTTTCATGACCACCCCTTCTTTGATCGCCATTTACAAGCCAGCCAGAGCCAGTGGGGCGTCCACCGCCACCCACCAAAAAAAACTACGTGATCAGCGCAAAGTGGAAGAGCTCCGAATCCTGGCCTGCGTCCATGGACCTGCAAATCTACCATCCTTAACAAGCTTGATCCACTTAACTCGAAGCAACAAACATTCTTCTTCTCTCAAGCTTTTCGCTATGCGCCTTGTCGAGCTCACCGAGCGCTCCTCCTCGATCATCATGGTCCAACGAGCTCGCAAGAACGGATTCCCCTTCTTCACAAGGTTCCGCAGAGGCGAATGGCAGGACCAACTGATCGGAGCCTTTCAATGTCAATCCCACGCCCACTTGGGCCGGGTCAAGGTCCGACCCACCACCACCATCTCTTCCCTCTCAACCATGCACCAAGACATCTGCCACGTGGCTCAGGATAAGAGGGTCTCGCTCATCGTCCTGCCCTTCCACAATAGTTGGAGCAGCGAGGAGACTACGTGGATGAGCCATGGTTGGAGGCGGGTGAACCAGAGGGTGTTGGACAGTGCGCCGTGCTCGGTGGCGGTCCTTGTCGATCGTGGACTCGGGGCTAGTGGGGCCCAGCGGATTTGTGTTCTCTTTTTTGGTGGGCCCGACGACCGTGCGGCCCTCGAGTTGGGCCGACGAATGGCGGAGCATCCGACGGTGAAGCTGACGGTGGTCAGGTTCCACGTCATGCTCGTGGAGGTTAATAATAAACATGTCGTTTTGGAACCCATGCCTTCAGAATCCTACGCTGATCATGGCCGTGACGGTAATGCAAAACAGAAGCTGGATGACGACTTGGCAATGGTAGAGTTTAGAAGCAAATGTGGCGAATCGGTCGAGTACGTCGAGAGGGAGGCGAACGTCGACGACGACGACATTGTTGAAAGGGTGGTGGACATTGGACGAGAAGGCGGTTACGACCTAATTGTGGTCGGAAAAGGTCGGTTTCCATCGATCGTGGCGGTGAAATTAGCAGATCATCGAACGCAGCTGACCGAGCTCGGGCTAATCGGCGACATACTCGTGACCTCCCACGGGGGAGTACTGGCTTCACTACTGGTAGTTCAACAACATTGA 2364 56.77 MSVNISAIKTASEGVWQGDNPLDFAFPLLIVQCILILFVTRFLTFLLKPLRQPKVTAEILGGILLGPSASGRSKLFLDRIFPPWSTPILESVASIGLLFFLFLVGLELDLSSLRRGGTKAFGIAFAGISATFLGGVGVTFVLRNTVDGADQVGYTQFVVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGGAGDNPLVSVWVLLSGVGFVVFMMVAIRPVMKRVARRFAPEQKAAEEAYICVTLVGVLMAGLATDFIGIHSIFGGFVFGLMVPKGGRFAERLMERIEDFVSGLLLPLYFASSGLKTDIGKIRGGRAWGLLALLISTACAGKILATFLVSMAFLMSPRDSLALGLLMNTKGLVDLIVLNIGKDKKVLNDEVFALSVLMALFTTFMTTPSLIAIYKPARASGASTATHQKKLRDQRKVEELRILACVHGPANLPSLTSLIHLTRSNKHSSSLKLFAMRLVELTERSSSIIMVQRARKNGFPFFTRFRRGEWQDQLIGAFQCQSHAHLGRVKVRPTTTISSLSTMHQDICHVAQDKRVSLIVLPFHNSWSSEETTWMSHGWRRVNQRVLDSAPCSVAVLVDRGLGASGAQRICVLFFGGPDDRAALELGRRMAEHPTVKLTVVRFHVMLVEVNNKHVVLEPMPSESYADHGRDGNAKQKLDDDLAMVEFRSKCGESVEYVEREANVDDDDIVERVVDIGREGGYDLIVVGKGRFPSIVAVKLADHRTQLTELGLIGDILVTSHGGVLASLLVVQQH 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42096130 42099451 + Lag0012545.1 Lac1g2053 595624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2053 787 FunFam Cation/H(+) antiporter 15 28 433 - -
Lac1g2053 787 CDD USP_Like 622 741 - -
Lac1g2053 787 PANTHER CATION/H + ANTIPORTER 9 787 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lac1g2053 787 Gene3D - 495 750 - -
Lac1g2053 787 Gene3D - 28 434 IPR038770 -
Lac1g2053 787 Pfam Sodium/hydrogen exchanger family 36 423 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2021 Lac-Chr1:41782541 Lac1g2053 Lac-Chr1:42096130 0.00E+00 dispersed
Lac1g2053 Lac-Chr1:42096130 Lac5g2191 Lac-Chr5:40501841 8.70E-193 dispersed
Lac1g2053 Lac-Chr1:42096130 Lac7g2881 Lac-Chr7:47919347 8.40E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2053 K26731 - csv:101207589 976.467