Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2062 ATGATGAATATCCAAGTTAGCCAATGGTGTGTCTCAGCCAAGCCTTTTTTTGCTGTGGTGTTCTTGCAGTTTGGGCTTGCAGGAATGGACATCCTGTCTAAAGCAGCTCTCAACCAAGGAATGAGCAACTATGTTCTTGTTGTTTATCGCCATGCAGTTGCCACAATTGTTATAGCTCCTTTTGCACTGATTTTTGACAAGAAGGTCAGACCAAAGATGACAATTCCAGTCTTTGCCAAGTTAATGGTGCTCAGCTTGCTAGAGCCAGTGATCGATCAGAACTTGTATTTCTTGGGAATGAAGTACACAACAGCAACTTTTGCAGCTGCCATGTGCAATATTCTCCCTGCCATAACCTTTGTAATGGCTTGGATCCTCAGGCTCGAGAAGGTAAAAATCAAAAGCATCAGAAGCCAAGCCAAGTTGGTGGGAACCATAGCAACAGTTGGAGGAGCCATGATAATGACACTGATAAAAGGCCCAATTCTAGAGCTATTTTGGGTGAAAGAGAGAGCAAACCACCAACAACAAAGGGGCGATATCAGCCTTGAACACACAATCAAAGGTTCATTTATGATCACAATCGGCTGTTTCAGCTGGGCCTCCTTCATGATTCTTCAGGCAATCACTTTGAAAGCTTACCCAGCCGAGCTTTCTCTCACGGCTTGGATCTGCCTGTTGGGCACTGCGGAGGGCACTGTGTTGGCTTTGGTTATGGAAAGAGGAAATGCCGCCGTTTGGTCCATTGGTTGGGGAACTAAATTGCTCGCCGCTGTTTATAGTGGGATATTTTGTTCAGGACTTGCTTATTACATTCAAGGAATAGTTATGAAAGACAAAGGACCTGTGTTTGTGACTGCCTTTAGCCCTTTGAGTATGGTCATTGTGGCCATTATGAGTTCCTTCATTTTGGGCGAGCGTCTTTACTTTGGAAGGGTACTTGGAGCTGTTGTGATAATTGTGGGGTTGTACCTTGTTGTTTGGGGCAAAAACAAAGATGGAAATTCCTCAAGTGAAGATTTGAAATTGCCCACCAAACAAACAAGAGAAATAGAAGCCAACAAGATGGAAAGTTTAACAATTGAAGCATCTAATTCTGTTGATGGTCTAAAGAATGAGCAAAAATAA 1128 43.26 MMNIQVSQWCVSAKPFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKKVRPKMTIPVFAKLMVLSLLEPVIDQNLYFLGMKYTTATFAAAMCNILPAITFVMAWILRLEKVKIKSIRSQAKLVGTIATVGGAMIMTLIKGPILELFWVKERANHQQQRGDISLEHTIKGSFMITIGCFSWASFMILQAITLKAYPAELSLTAWICLLGTAEGTVLALVMERGNAAVWSIGWGTKLLAAVYSGIFCSGLAYYIQGIVMKDKGPVFVTAFSPLSMVIVAIMSSFILGERLYFGRVLGAVVIIVGLYLVVWGKNKDGNSSSEDLKLPTKQTREIEANKMESLTIEASNSVDGLKNEQK 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42153373 42157367 + Lag0012554.1 Lac1g2062 595633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2062 375 MobiDBLite consensus disorder prediction 355 375 - -
Lac1g2062 375 MobiDBLite consensus disorder prediction 358 375 - -
Lac1g2062 375 Pfam EamA-like transporter family 24 136 IPR000620 GO:0016020(InterPro)
Lac1g2062 375 Pfam EamA-like transporter family 188 327 IPR000620 GO:0016020(InterPro)
Lac1g2062 375 PANTHER WAT1-RELATED PROTEIN 18 340 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lac1g2062 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 236 332 - -
Lac1g2062 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2062 Lac-Chr1:42153373 Lac8g2482 Lac-Chr8:42723977 4.00E-103 dispersed
Lac1g2062 Lac-Chr1:42153373 Lac1g2414 Lac-Chr1:45537259 1.10E-49 wgd
Lac1g2062 Lac-Chr1:42153373 Lac13g0963 Lac-Chr13:7988948 8.30E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2062 - - - 0.0