Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2071 | ATGGGGAACGCCCATGGCCACCGAAAGCATTTCAGCCATGGCGTAAATATCTCTCGACCCACTAACGCTCATTCTCCCTCCAATAAATACTCCCCATCTGCACCTGCTTCTCAAAGTTCGACCTCGACGGCGAAGATGGAGTCCTTGCCCTACGCCCGCGTTGATTCGAGCCTCCGAGCGCTTGCGGGTCAGGCCGAGGGCTTCGGCCGCTTTGCCATTGGTGGCCTCCATGGTTCTGTTTATTGCGTCACTAATTTGGCAGATGATGGTCCGGGATCACTTAGGTTCGGATGTCGTATGAAAGAGCCCCTCTGGATTGTCTTTGAAGTTTCGGGCACAATTAACTTGTCTACATATTTGAGTGTGTCCTCTTATAAGACTGTAGATGGTCGTGGTCAGAGGATAAAAATTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGTAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTCGATGGAATTCAAATTAAACCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGATTATGATGATGGGTTGATCGATATCACCCGAGGAAGCACAGATATCACTATTTCTAGGTGTCTCTTCTCACAGCATGACAAGACAATGCTCATTGGAGCAGATCCCTCTCACATTGGTGACCGATGTATCCGTGTCACTATTCACCACTGTTTTTTCGATGGTACACGTCAACGACATCCACGCGTTAGATACGCTCAAGTACATTTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGCGTAGAATCAAAGATATACTCTCAGTGCAACATATACGAAGCGGGAGAGAAAAAGGTGGCATTTAAATATTTAACTGAAAAGGCAACAGACAAGGAAGAGCCTTCAAGTGGATGCATATGGTCTGATGGAGATTTATTTCTAAGTTGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGAACATAACTTGTTTCATCCCTCACAACATTACTCTGCTTGGACTGTGGAACCTCCAACAGATTCTCTCAAACATATTCTCCAACATTGTACTGGATGCCAAAACATCCCAAGGCCCACTGATCAGCCACTGGTACCTTAG | 1131 | 45.8 | MGNAHGHRKHFSHGVNISRPTNAHSPSNKYSPSAPASQSSTSTAKMESLPYARVDSSLRALAGQAEGFGRFAIGGLHGSVYCVTNLADDGPGSLRFGCRMKEPLWIVFEVSGTINLSTYLSVSSYKTVDGRGQRIKITGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCLFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESKIYSQCNIYEAGEKKVAFKYLTEKATDKEEPSSGCIWSDGDLFLSCTQSGLLAATAEHNLFHPSQHYSAWTVEPPTDSLKHILQHCTGCQNIPRPTDQPLVP | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 42235155 | 42238166 | - | Lag0012563.1 | Lac1g2071 | 595642 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2071 | 376 | SMART | amb_all | 76 | 289 | IPR002022 | - | |
Lac1g2071 | 376 | ProSiteProfiles | Zinc finger integrase-type profile. | 323 | 364 | IPR003308 | GO:0008270(InterPro) | |
Lac1g2071 | 376 | PANTHER | PECTATE LYASE 18-RELATED | 57 | 346 | IPR045032 | GO:0030570(InterPro) | |
Lac1g2071 | 376 | Pfam | Pectate lyase | 120 | 281 | IPR002022 | - | |
Lac1g2071 | 376 | MobiDBLite | consensus disorder prediction | 15 | 44 | - | - | |
Lac1g2071 | 376 | PRINTS | Pollen allergen Amb family signature | 119 | 135 | IPR018082 | - | |
Lac1g2071 | 376 | PRINTS | Pollen allergen Amb family signature | 266 | 285 | IPR018082 | - | |
Lac1g2071 | 376 | PRINTS | Pollen allergen Amb family signature | 64 | 81 | IPR018082 | - | |
Lac1g2071 | 376 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Lac1g2071 | 376 | Gene3D | - | 50 | 356 | IPR012334 | - | |
Lac1g2071 | 376 | SUPERFAMILY | Pectin lyase-like | 62 | 370 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2071 | Lac-Chr1:42235155 | Lac8g2372 | Lac-Chr8:41832794 | 9.10E-39 | dispersed | |
Lac1g2071 | Lac-Chr1:42235155 | Lac13g0672 | Lac-Chr13:5111088 | 4.80E-40 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2071 | K01728 | - | csv:101219724 | 709.138 |