Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2071 ATGGGGAACGCCCATGGCCACCGAAAGCATTTCAGCCATGGCGTAAATATCTCTCGACCCACTAACGCTCATTCTCCCTCCAATAAATACTCCCCATCTGCACCTGCTTCTCAAAGTTCGACCTCGACGGCGAAGATGGAGTCCTTGCCCTACGCCCGCGTTGATTCGAGCCTCCGAGCGCTTGCGGGTCAGGCCGAGGGCTTCGGCCGCTTTGCCATTGGTGGCCTCCATGGTTCTGTTTATTGCGTCACTAATTTGGCAGATGATGGTCCGGGATCACTTAGGTTCGGATGTCGTATGAAAGAGCCCCTCTGGATTGTCTTTGAAGTTTCGGGCACAATTAACTTGTCTACATATTTGAGTGTGTCCTCTTATAAGACTGTAGATGGTCGTGGTCAGAGGATAAAAATTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGTAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTCGATGGAATTCAAATTAAACCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGATTATGATGATGGGTTGATCGATATCACCCGAGGAAGCACAGATATCACTATTTCTAGGTGTCTCTTCTCACAGCATGACAAGACAATGCTCATTGGAGCAGATCCCTCTCACATTGGTGACCGATGTATCCGTGTCACTATTCACCACTGTTTTTTCGATGGTACACGTCAACGACATCCACGCGTTAGATACGCTCAAGTACATTTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGCGTAGAATCAAAGATATACTCTCAGTGCAACATATACGAAGCGGGAGAGAAAAAGGTGGCATTTAAATATTTAACTGAAAAGGCAACAGACAAGGAAGAGCCTTCAAGTGGATGCATATGGTCTGATGGAGATTTATTTCTAAGTTGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGAACATAACTTGTTTCATCCCTCACAACATTACTCTGCTTGGACTGTGGAACCTCCAACAGATTCTCTCAAACATATTCTCCAACATTGTACTGGATGCCAAAACATCCCAAGGCCCACTGATCAGCCACTGGTACCTTAG 1131 45.8 MGNAHGHRKHFSHGVNISRPTNAHSPSNKYSPSAPASQSSTSTAKMESLPYARVDSSLRALAGQAEGFGRFAIGGLHGSVYCVTNLADDGPGSLRFGCRMKEPLWIVFEVSGTINLSTYLSVSSYKTVDGRGQRIKITGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCLFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESKIYSQCNIYEAGEKKVAFKYLTEKATDKEEPSSGCIWSDGDLFLSCTQSGLLAATAEHNLFHPSQHYSAWTVEPPTDSLKHILQHCTGCQNIPRPTDQPLVP 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42235155 42238166 - Lag0012563.1 Lac1g2071 595642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2071 376 SMART amb_all 76 289 IPR002022 -
Lac1g2071 376 ProSiteProfiles Zinc finger integrase-type profile. 323 364 IPR003308 GO:0008270(InterPro)
Lac1g2071 376 PANTHER PECTATE LYASE 18-RELATED 57 346 IPR045032 GO:0030570(InterPro)
Lac1g2071 376 Pfam Pectate lyase 120 281 IPR002022 -
Lac1g2071 376 MobiDBLite consensus disorder prediction 15 44 - -
Lac1g2071 376 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
Lac1g2071 376 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Lac1g2071 376 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Lac1g2071 376 MobiDBLite consensus disorder prediction 1 44 - -
Lac1g2071 376 Gene3D - 50 356 IPR012334 -
Lac1g2071 376 SUPERFAMILY Pectin lyase-like 62 370 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2071 Lac-Chr1:42235155 Lac8g2372 Lac-Chr8:41832794 9.10E-39 dispersed
Lac1g2071 Lac-Chr1:42235155 Lac13g0672 Lac-Chr13:5111088 4.80E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2071 K01728 - csv:101219724 709.138