Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2096 ATGAGTGCTCATGCCGACCGGCACAATGAGTTAAGAGAACCAAGTCACCACGCTCAGGATGGGAATGGAAGCGTGAACGATGGTTTACCTGGCAGGGAACAGAGCCCGGTCGAGGGAAATGAGTTGAAGGTCAATGGATTAAGTAGAAGTTCAGAAGATGGACGAAAACCTAGTGTTCAAGCCCAGGACATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCCATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTAGAAAATGATGACTCCACTCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCGGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGACAAATCACATAGATATTGTCTTAACAGAGGTGGTTATGCCTTGCTTATCTGGCGTTGGTCTTTTATGCAAGATTATGAGCCATAAAACAAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGACTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTCGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGCGGTAGTGGAAGTGAGAGTGGCACACAGACCCAAATATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACCGGGAGCAATGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAATATTGGAGATGGAAGTGATGACGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGGATGGGATCAAAAACCGGAACGTCCTGATAGTACATGTGCTCAAGTCGTCCACTCAAATGCAGATGCATTTGCTAATTATGTGCCACCTGTTTTGATGGCAGAGTGTCAGGTGCAGAATAAGCAACTTGAAACCGTTCCCATGGGTAAAGTTGAATTAGGCGTGCACAGAAATCTAGATTTACATCTTGAACTATCCACGGAACATCCAACCAAGCTCGTCAACAGGAAACAGAATATTATGCTTGAGATAGGATCCAGTGGATTTAATGAGCAGTTTAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCCAGCAAACTGAAGTACGAACAAACAACTGTTACTGGGCTTGCTACCAATCTTACTGATTCTAAGATGGACGACACTGTGTTTGAGGCACCAAGCAACCATCCCAAGATCACAGACATTAAGAACAAAGATGTTACGGATTTAGAAGAATTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCGGTCCAAGATGAGCGAAATGTATTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTATAACGCTGGCTCAAATTCTAACAAGAGTCCAACTGGGAATGCTGGAAGTAACTCTCCGCCTGTTAATGGCTTAGAAGTTACGAACCAAGAAAACATGCAAGATATTCGATCTCATTCAAGTAGTAATCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACCAATAATGCATTTTCGAAATCCATAGTTACTAATAACAAGTCAGCAATGGCATCAACAGTCAACTGTTTGCACCCGTCGGCAGCTTTCCAACCTGTTAAGAACGACAGTCTATCTGTTCCTCAGCAAGCTGATAATGTCAATAATGTCACAACTACAACAATGCAAGCTCAGTCTAATTGTGTGCACATGGAATCTCAAATACAGCAACTTTGTCACCCGTATGATCACACCCATCAGCTTGCCCACAATATTCAACTAGTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTGCCACGCATTGTGGGTCAACCAATGTGTTAAATGGCCATGTAGAAGGTAATGCAGCAAATTATAGTGTGAATGGTAGTGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGCAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAACGGAATAGGTCGGAAAAGCCGAAGTGGGGATGCCAGTGGAAGTGGTAGTGGAAGTGGAAACAAAGTGGACCAAAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTCCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGCGTCAGGGGACAGTTTGTGAGACAAAACACAAGTGAAAACACAAGCAATGTGGGAGATGGCTAA 2352 43.28 MSAHADRHNELREPSHHAQDGNGSVNDGLPGREQSPVEGNELKVNGLSRSSEDGRKPSVQAQDILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDIVLTEVVMPCLSGVGLLCKIMSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQISVKSKSVEKSDNNTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASGWDQKPERPDSTCAQVVHSNADAFANYVPPVLMAECQVQNKQLETVPMGKVELGVHRNLDLHLELSTEHPTKLVNRKQNIMLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEQTTVTGLATNLTDSKMDDTVFEAPSNHPKITDIKNKDVTDLEEFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKSPTGNAGSNSPPVNGLEVTNQENMQDIRSHSSSNPPNQCSNGDSNNIDMGSTTNNAFSKSIVTNNKSAMASTVNCLHPSAAFQPVKNDSLSVPQQADNVNNVTTTTMQAQSNCVHMESQIQQLCHPYDHTHQLAHNIQLVSSEHNDFSLKKISAAATHCGSTNVLNGHVEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRKSRSGDASGSGSGSGNKVDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNVGDG 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42459973 42467808 - Lag0012588.1 Lac1g2096 595667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2096 783 Pfam CCT motif 729 771 IPR010402 GO:0005515(InterPro)
Lac1g2096 783 MobiDBLite consensus disorder prediction 667 693 - -
Lac1g2096 783 MobiDBLite consensus disorder prediction 213 299 - -
Lac1g2096 783 PANTHER TWO-COMPONENT RESPONSE REGULATOR 75 344 IPR045279 GO:0009736(InterPro)
Lac1g2096 783 CDD psREC_PRR 91 194 - -
Lac1g2096 783 SUPERFAMILY CheY-like 87 213 IPR011006 -
Lac1g2096 783 ProSiteProfiles CCT domain profile. 729 771 IPR010402 GO:0005515(InterPro)
Lac1g2096 783 MobiDBLite consensus disorder prediction 474 541 - -
Lac1g2096 783 FunFam Two-component response regulator-like PRR37 89 247 - -
Lac1g2096 783 Gene3D - 88 251 - -
Lac1g2096 783 MobiDBLite consensus disorder prediction 667 783 - -
Lac1g2096 783 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160(InterPro)
Lac1g2096 783 MobiDBLite consensus disorder prediction 1 17 - -
Lac1g2096 783 MobiDBLite consensus disorder prediction 457 541 - -
Lac1g2096 783 MobiDBLite consensus disorder prediction 766 783 - -
Lac1g2096 783 MobiDBLite consensus disorder prediction 739 754 - -
Lac1g2096 783 MobiDBLite consensus disorder prediction 261 276 - -
Lac1g2096 783 MobiDBLite consensus disorder prediction 44 60 - -
Lac1g2096 783 SMART REC_2 89 204 IPR001789 GO:0000160(InterPro)
Lac1g2096 783 MobiDBLite consensus disorder prediction 1 60 - -
Lac1g2096 783 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160(InterPro)
Lac1g2096 783 MobiDBLite consensus disorder prediction 700 731 - -
Lac1g2096 783 MobiDBLite consensus disorder prediction 213 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2096 Lac-Chr1:42459973 Lac4g0028 Lac-Chr4:517743 3.10E-49 dispersed
Lac1g2096 Lac-Chr1:42459973 Lac3g0598 Lac-Chr3:4642751 8.80E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23264 PF00072 Response_reg 7.60E-20 CL0304 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2096 K12129 - csv:101210765 1315.06