Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2105 ATGTTGGACCTCAATCTCTGTATTCTCTCCGGAGATTCCGCTTCCGGGTCCGCCGATTTAAGTCCCTTGAAGCTTTCCGGCGCCGGAGTTGAGAGTCCCATTTCTTCCTCCGTCGTCAACGCCGATCATTCCAACACCACCGGCGACGAGGACTCCTCTTCCAACGCCGATTGCGGTTTCACTTTCTCTTTCAGCATTCTCAACAACAACGACGATCAACGCGACCGGGCGGCCCGGTTTCCCCCCGTCGCCGGCGTCTGTTCGCAGAGGAAATGGCTGGATTCTGATTTTGTTAGAGCCAATAACAGAATCGTGGCTCAACAGTCCGTTCATCTGGTGAAGAAGGGCCGGCGAGGTCCCAAATCGAGAAGCTCGCAGTATCGTGGGGTTACGTATTACCGAAGAACAGGGAGATGGGAATCGCATATCTGGGATAGTGGGAAACAAGTCTATTTGGGAGGTTTTGACACAGCTCTTTCTGCAGCCAGGGCTTATGATCGAGCTGCAATTAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAACATCAGCGACTACAGTAAAGAGATTAAACAGATGAGTAACTTTAGTAAAGAGGAATTTGTGCATATTCTTCGAAGGCAGAGCACTGGGTTTTCAAGAGGGAGCTCCAAATACAGAGGAGTTACTCTGCACAAGTGTGGGCGATGGGAGGCTCGAATGGGGCAGTTTTTGGGGAAGAAATATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATACAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCATATGAGATGGAGATTGCTTTTGAATCTGAAAACCCTGGTATGGGTGATATTGACTTGAACTTGGGCATTGCCCCTCCAGCTTGTCCATCTGAAGAGCAAAGGGACAACCTTAATGGCTGTGCTCCAAATTTCTGTGGCTTAAAAAAATCAGATTATTCTGAGAGATCTGGGGTGATGCTTCAAAACCATGCTTCTGTGGCTGTGAGAGCACACCCTTCTTTTATCAGAACTGCCAATTTCTTTCCTACCTACCAGGAAAGAGCAATGGAGAAGAGAATAGAAGTTGAATCCTTACCGAACTGGGGTTGGCATATCCCAACCCCCTACGGCGGAGCAACTTCAGCCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCTGCCGTTCCTCCGCCCTCGCCCCGCCATCTTCTTCCAGCGCCGCCGCCGTTCCTCCGCTACCGCATCAGGCCCGATATTCCCGCCAGTAACAGCCTACCTCATTTTTACTGCAGGACTTGA 1344 49.26 MLDLNLCILSGDSASGSADLSPLKLSGAGVESPISSSVVNADHSNTTGDEDSSSNADCGFTFSFSILNNNDDQRDRAARFPPVAGVCSQRKWLDSDFVRANNRIVAQQSVHLVKKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTALSAARAYDRAAIKFRGVHADINFNISDYSKEIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESENPGMGDIDLNLGIAPPACPSEEQRDNLNGCAPNFCGLKKSDYSERSGVMLQNHASVAVRAHPSFIRTANFFPTYQERAMEKRIEVESLPNWGWHIPTPYGGATSAPFFSTAASSGFPSSPAVPPPSPRHLLPAPPPFLRYRIRPDIPASNSLPHFYCRT 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42541476 42545730 + Lag0012597.1 Lac1g2105 595676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2105 447 MobiDBLite consensus disorder prediction 29 54 - -
Lac1g2105 447 FunFam AP2-like ethylene-responsive transcription factor 217 277 - -
Lac1g2105 447 FunFam AP2-like ethylene-responsive transcription factor 125 184 - -
Lac1g2105 447 Gene3D AP2/ERF domain 217 276 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2105 447 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2105 447 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 70 294 - -
Lac1g2105 447 SUPERFAMILY DNA-binding domain 217 276 IPR016177 GO:0003677(InterPro)
Lac1g2105 447 CDD AP2 217 277 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2105 447 SMART rav1_2 126 188 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2105 447 SMART rav1_2 218 281 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2105 447 SUPERFAMILY DNA-binding domain 125 184 IPR016177 GO:0003677(InterPro)
Lac1g2105 447 MobiDBLite consensus disorder prediction 30 54 - -
Lac1g2105 447 ProSiteProfiles AP2/ERF domain profile. 218 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2105 447 CDD AP2 125 184 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2105 447 ProSiteProfiles AP2/ERF domain profile. 126 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2105 447 PRINTS Ethylene responsive element binding protein signature 219 230 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2105 447 PRINTS Ethylene responsive element binding protein signature 257 277 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2105 447 Pfam AP2 domain 126 174 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2105 447 Pfam AP2 domain 217 267 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2105 Lac-Chr1:42541476 Lac9g2541 Lac-Chr9:44060890 5.10E-105 dispersed
Lac1g2105 Lac-Chr1:42541476 Lac10g3053 Lac-Chr10:45026310 1.60E-87 wgd
Lac1g2105 Lac-Chr1:42541476 Lac13g0882 Lac-Chr13:7202381 2.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23265 PF00847 AP2 1.50E-10 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2105 K09284 - csv:101211008 638.647