Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2105 | ATGTTGGACCTCAATCTCTGTATTCTCTCCGGAGATTCCGCTTCCGGGTCCGCCGATTTAAGTCCCTTGAAGCTTTCCGGCGCCGGAGTTGAGAGTCCCATTTCTTCCTCCGTCGTCAACGCCGATCATTCCAACACCACCGGCGACGAGGACTCCTCTTCCAACGCCGATTGCGGTTTCACTTTCTCTTTCAGCATTCTCAACAACAACGACGATCAACGCGACCGGGCGGCCCGGTTTCCCCCCGTCGCCGGCGTCTGTTCGCAGAGGAAATGGCTGGATTCTGATTTTGTTAGAGCCAATAACAGAATCGTGGCTCAACAGTCCGTTCATCTGGTGAAGAAGGGCCGGCGAGGTCCCAAATCGAGAAGCTCGCAGTATCGTGGGGTTACGTATTACCGAAGAACAGGGAGATGGGAATCGCATATCTGGGATAGTGGGAAACAAGTCTATTTGGGAGGTTTTGACACAGCTCTTTCTGCAGCCAGGGCTTATGATCGAGCTGCAATTAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAACATCAGCGACTACAGTAAAGAGATTAAACAGATGAGTAACTTTAGTAAAGAGGAATTTGTGCATATTCTTCGAAGGCAGAGCACTGGGTTTTCAAGAGGGAGCTCCAAATACAGAGGAGTTACTCTGCACAAGTGTGGGCGATGGGAGGCTCGAATGGGGCAGTTTTTGGGGAAGAAATATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATACAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCATATGAGATGGAGATTGCTTTTGAATCTGAAAACCCTGGTATGGGTGATATTGACTTGAACTTGGGCATTGCCCCTCCAGCTTGTCCATCTGAAGAGCAAAGGGACAACCTTAATGGCTGTGCTCCAAATTTCTGTGGCTTAAAAAAATCAGATTATTCTGAGAGATCTGGGGTGATGCTTCAAAACCATGCTTCTGTGGCTGTGAGAGCACACCCTTCTTTTATCAGAACTGCCAATTTCTTTCCTACCTACCAGGAAAGAGCAATGGAGAAGAGAATAGAAGTTGAATCCTTACCGAACTGGGGTTGGCATATCCCAACCCCCTACGGCGGAGCAACTTCAGCCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCTGCCGTTCCTCCGCCCTCGCCCCGCCATCTTCTTCCAGCGCCGCCGCCGTTCCTCCGCTACCGCATCAGGCCCGATATTCCCGCCAGTAACAGCCTACCTCATTTTTACTGCAGGACTTGA | 1344 | 49.26 | MLDLNLCILSGDSASGSADLSPLKLSGAGVESPISSSVVNADHSNTTGDEDSSSNADCGFTFSFSILNNNDDQRDRAARFPPVAGVCSQRKWLDSDFVRANNRIVAQQSVHLVKKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTALSAARAYDRAAIKFRGVHADINFNISDYSKEIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESENPGMGDIDLNLGIAPPACPSEEQRDNLNGCAPNFCGLKKSDYSERSGVMLQNHASVAVRAHPSFIRTANFFPTYQERAMEKRIEVESLPNWGWHIPTPYGGATSAPFFSTAASSGFPSSPAVPPPSPRHLLPAPPPFLRYRIRPDIPASNSLPHFYCRT | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 42541476 | 42545730 | + | Lag0012597.1 | Lac1g2105 | 595676 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2105 | 447 | MobiDBLite | consensus disorder prediction | 29 | 54 | - | - | |
Lac1g2105 | 447 | FunFam | AP2-like ethylene-responsive transcription factor | 217 | 277 | - | - | |
Lac1g2105 | 447 | FunFam | AP2-like ethylene-responsive transcription factor | 125 | 184 | - | - | |
Lac1g2105 | 447 | Gene3D | AP2/ERF domain | 217 | 276 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2105 | 447 | Gene3D | AP2/ERF domain | 125 | 184 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2105 | 447 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 70 | 294 | - | - | |
Lac1g2105 | 447 | SUPERFAMILY | DNA-binding domain | 217 | 276 | IPR016177 | GO:0003677(InterPro) | |
Lac1g2105 | 447 | CDD | AP2 | 217 | 277 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2105 | 447 | SMART | rav1_2 | 126 | 188 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2105 | 447 | SMART | rav1_2 | 218 | 281 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2105 | 447 | SUPERFAMILY | DNA-binding domain | 125 | 184 | IPR016177 | GO:0003677(InterPro) | |
Lac1g2105 | 447 | MobiDBLite | consensus disorder prediction | 30 | 54 | - | - | |
Lac1g2105 | 447 | ProSiteProfiles | AP2/ERF domain profile. | 218 | 275 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2105 | 447 | CDD | AP2 | 125 | 184 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2105 | 447 | ProSiteProfiles | AP2/ERF domain profile. | 126 | 182 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2105 | 447 | PRINTS | Ethylene responsive element binding protein signature | 219 | 230 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2105 | 447 | PRINTS | Ethylene responsive element binding protein signature | 257 | 277 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2105 | 447 | Pfam | AP2 domain | 126 | 174 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2105 | 447 | Pfam | AP2 domain | 217 | 267 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2105 | Lac-Chr1:42541476 | Lac9g2541 | Lac-Chr9:44060890 | 5.10E-105 | dispersed | |
Lac1g2105 | Lac-Chr1:42541476 | Lac10g3053 | Lac-Chr10:45026310 | 1.60E-87 | wgd | |
Lac1g2105 | Lac-Chr1:42541476 | Lac13g0882 | Lac-Chr13:7202381 | 2.50E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23265 | PF00847 | AP2 | 1.50E-10 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2105 | K09284 | - | csv:101211008 | 638.647 |