Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2113 ATGTCTCTTATAGCCACAAAATTTGTGTTTCTTCTATTCTCCTTTCTCCTCGTCTTCAATTTTGGGAAGAGCCAAGAACAACAACTCATTGTAAATTACTACAACGAAAGTTGCCCGAGAGCGGAAGCCATAGTCAAACAACAAGTTTTGTCCTTATACAAAAAACATGGCAACTCCGCCATTTCATGGATAAGAAATCTCTTCCATGATTGCATGGTCAAGTCATGTGATGCATCTGTTTTGTTGGAGGTGGAAAAAACAGAAGAGGGTGAGATTATTTCAGAGATGAAGTCTCCAAGGAGCTTTGGAATTAGGAATCTGAAATATGTTAACAAAATAAAACAAGTCCTTGAAAATGAATGCCCCAACACTGTTTCTTGTGCTGATATTATGGCTCTGGCTGCAAGAGATGCCATTCTTCTGTTAGGGGGAGTGGAGATGGAAATGAAAACAGGGAGAAGAGATGGTAGAGAAAGCTATGAAGCAGTGGTGGAAGAATTCATTCCAAATCATAATGACTCTCTTTCATTGGTCCTTTCACGCTTTCAAGACATTGGCATTGATGCTCAAGCTACCGTTGCTCTTTTAGGAGCACATTCAGTGGGTCGGGTCCACTGCGTGAATATAGTGAACCGGCTGTACCCGAGCGTGGACCCGAGTCTGGATCCGGACCATGCAGAGTACTTAAAACACAGGTGCCCGGACCCAAACCCGGACCCGAAGGCCGTGGAATACGCGAGGAACGATTTGGAAACGCCGATGGCGCTGGACAACAACTACTACAAAAACGTATTGGGCCACAAGGCCCTTTTGTTGGTGGACCAGCAATTGGGCTCCAGCCCAATAACTCTTCCTTATGTCCAACACATGGCCTCCAATAACAGCTACTTCCTCGACCAATTTGCTAGGGCTGTGCTCTTGTTGTCTGAAAACAACCCTCTCACCAATGAACAAGGAGAGATTAGAAAGGATTGTCGACATATCAATCATTAA 993 44.31 MSLIATKFVFLLFSFLLVFNFGKSQEQQLIVNYYNESCPRAEAIVKQQVLSLYKKHGNSAISWIRNLFHDCMVKSCDASVLLEVEKTEEGEIISEMKSPRSFGIRNLKYVNKIKQVLENECPNTVSCADIMALAARDAILLLGGVEMEMKTGRRDGRESYEAVVEEFIPNHNDSLSLVLSRFQDIGIDAQATVALLGAHSVGRVHCVNIVNRLYPSVDPSLDPDHAEYLKHRCPDPNPDPKAVEYARNDLETPMALDNNYYKNVLGHKALLLVDQQLGSSPITLPYVQHMASNNSYFLDQFARAVLLLSENNPLTNEQGEIRKDCRHINH 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42602555 42604695 - Lag0012605.1 Lac1g2113 595684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2113 330 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 FunFam Peroxidase 32 177 - -
Lac1g2113 330 Pfam Peroxidase 45 293 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 Gene3D - 32 329 - -
Lac1g2113 330 Gene3D Peroxidase, domain 2 169 308 - -
Lac1g2113 330 ProSiteProfiles Plant heme peroxidase family profile. 28 329 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 SUPERFAMILY Heme-dependent peroxidases 28 329 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 FunFam Peroxidase 169 308 - -
Lac1g2113 330 PANTHER - 13 329 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2113 330 CDD secretory_peroxidase 28 328 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2113 Lac-Chr1:42602555 Lac5g2087 Lac-Chr5:39510460 3.90E-54 dispersed
Lac10g0687 Lac-Chr10:5289913 Lac1g2113 Lac-Chr1:42602555 3.20E-104 transposed
Lac1g2113 Lac-Chr1:42602555 Lac10g3028 Lac-Chr10:44846354 1.20E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2113 K00430 - csv:101221151 550.821