Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2114 ATGTCTGGTATTGACTTTTCTGTTCCTTCTTCTGTTGGTGAGTTTGTTCCTCAACAAAGCTCTCAGCTTTATCATCTTCCACCTCATAACCCTAACCCTAACCCTAACCCAAAGCCTGATTCTTCCCTCCCTCCTCCTCTCCCCAAGAAGAAGAGAAATTTGCCAGGAAAGCCAGATCCAGATGCTGAGGTTATTGCTTTATCTCCCAACACTCTCATGGCCACAAACAGATTCGTCTGTGAGATATGCAACAAAGGGTTTCAAAGGGACCAAAACTTGCAGCTTCACAGAAGAGGGCACAATCTGCCATGGAAGCTGAGGCAGAGAAGCAACAAAGAGGTGAAGAAGAAGGTTTATATATGCCCTGAGAAGTCTTGTGTTCACCATGATCCAGCCAGAGCCCTTGGGGACCTGACTGGGATTAAAAAGCACTTCAGTAGAAAGCACGGGGAGAAGAAATGGAAGTGTGAGAAGTGCTCTAAGAAATATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAAACCTGTGGAACTCGAGAGTACAAGTGTGACTGTGGAACACTCTTTTCCAGGAAAGACAGCTTCATAACTCACAGAGCATTCTGCGACGCTCTAGCAGAAGAAAGTGCGAGGCTAATCTCATCAGTCACAGCCGCAAATCCAAAGCCAAATTTCATTGCCAATTCACTCATCATCAACAACAACCAATCTCTCTTCAATTCCCAACACTTGTTCAATCTTCCCAATTCCCAACCCCGAATCTTTGTCCGATCAGACCATAGTAATTTCGACCCCTTCAATAATAACAATTACAATAATCCCAATATTCCGACCGAATCACCGACCATTCCCATAATCAACAACAATAATCTCTACGAAATCTCAAACAGAATTCTGGGTTTGAGCAGAAACCCTTCCAAGACGGCCGTCAGCCTCTCTCTCTCCAATAATGCCCAACCACAAGAGCCTGCCTATGAGTCCTCGTCGTCGATGGTGCCGATGTCGGCGACGGCGCTGCTGCTGAAGGCAGCGCAGTTGGGGTCAACGAAGAGCGACCCGTCGTGCTCGGGGAACAGCGTGGGAGTGATGAGTTCGTGTTCGAGTTCGTTCGATCGGAGCAAATTAGGGGAGTTGCAGCGGATGTTTGAGAGTGGCAATGGGAGGAAGGCTGAGCAGGGGAAGGGGTTGAGGGATTTTCTTGGGACGGCGGAGAGAGGAGAGGAGTTGGTTCCATTGATGGGGTTGAGCCAATTCATTGGCGATAATAATATTCGAGGATGA 1281 47.62 MSGIDFSVPSSVGEFVPQQSSQLYHLPPHNPNPNPNPKPDSSLPPPLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLISSVTAANPKPNFIANSLIINNNQSLFNSQHLFNLPNSQPRIFVRSDHSNFDPFNNNNYNNPNIPTESPTIPIINNNNLYEISNRILGLSRNPSKTAVSLSLSNNAQPQEPAYESSSSMVPMSATALLLKAAQLGSTKSDPSCSGNSVGVMSSCSSSFDRSKLGELQRMFESGNGRKAEQGKGLRDFLGTAERGEELVPLMGLSQFIGDNNIRG 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42624689 42626942 + Lag0012606.1 Lac1g2114 595685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2114 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Lac1g2114 426 SMART c2h2final6 78 100 IPR013087 -
Lac1g2114 426 SMART c2h2final6 154 174 IPR013087 -
Lac1g2114 426 SMART c2h2final6 119 149 IPR013087 -
Lac1g2114 426 FunFam protein indeterminate-domain 12-like 57 125 - -
Lac1g2114 426 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 365 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac1g2114 426 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Lac1g2114 426 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 153 177 - -
Lac1g2114 426 MobiDBLite consensus disorder prediction 17 62 - -
Lac1g2114 426 MobiDBLite consensus disorder prediction 28 51 - -
Lac1g2114 426 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 115 149 - -
Lac1g2114 426 Gene3D Classic Zinc Finger 132 211 - -
Lac1g2114 426 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 180 218 - -
Lac1g2114 426 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Lac1g2114 426 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Lac1g2114 426 Gene3D Classic Zinc Finger 58 130 - -
Lac1g2114 426 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0528 Lac-Chr12:5686990 Lac1g2114 Lac-Chr1:42624689 1.00E-81 dispersed
Lac12g2443 Lac-Chr12:41534019 Lac1g2114 Lac-Chr1:42624689 4.60E-89 dispersed
Lac1g2114 Lac-Chr1:42624689 Lac1g2895 Lac-Chr1:49859721 6.30E-89 dispersed
Lac4g2400 Lac-Chr4:43540927 Lac1g2114 Lac-Chr1:42624689 4.80E-06 dispersed
Lac10g0015 Lac-Chr10:237786 Lac1g2114 Lac-Chr1:42624689 3.30E-59 transposed
Lac7g2559 Lac-Chr7:43841733 Lac1g2114 Lac-Chr1:42624689 1.20E-80 transposed
Lac1g2114 Lac-Chr1:42624689 Lac10g3025 Lac-Chr10:44810321 2.60E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23267 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2114 K25870 - csv:101221389 425.246