Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2119 ATGAAGTTTCGTTTTCTTCTTTCTAGTTGTTGTTCTTCTCGATCGCTGGCAGCCATGGAAAACAGCCGGCACGATAGACAAGACAATGAGGGGTTTCGTGTGTACTCTTACAACGAGCTTAAATCGGCCACCAATGGATTTAGTGCGGCAAATAAGGTTGGAGAGGGCGGATTCGGCACCGTTTACAAGGGTCGGCTTCGGGATGGCAGGAAGATTGCTGTGAAGGTGCTTTCTGTTGAGGTAGAATCCATGAGAGGAGAAAGGGAGTTCATTGCTGAATTAACTTCACTTTCTAATATCAGACATGAAAATCTTGTGGAGCTTAAAGGGTTTTATGTTGATGGAAGCCAGAGATATTTGGTCTATGATTACATGGAAAACAACAGCCTTGCATACGCTCTTCAGGGTGTGGGGGAAAATAGAATGATACTTAGTTGGCAATCCAGAAAGGACATTTTGATTGGAGTAGCTCGTGGGCTTGCCTATCTTCATGAGGAGGTTGACCCGCATATAGTTCATAGAGATATAAAAGCCGGCAATATACTACTCGACCATAATTTTACACCTAAAGTTGCGGATTTTGGATTGGCTAAGTTGTTGACAGAGAACCTTTCTCATGTTAGTACTCGTGTTGCTGGCACAATAGGATATCTTGCTCCGGAATATGCTGTGAGCGGCCATTTGACGCGAAAATCAGATGTCTATAGCTTTGGAGTGTTGTTATTGGAGATTGTCAGTGGGAGAGCAACTGTTGATTTTGATTTGGAACGTGGTGAACACCACTTGGTTCAGAAGGTATGGGAACATTACAAGGCGAATGAGCTAGTAAAATTGATAGATCCCATGCTTGACATGGACTTCCGCAAAGAAGAGGCTGTTAGATTTATGAAAATTGGCCTACTCTGTGTGCAAGAAAACACAATGAAACGACCACAAATGTCTCTCACTGTAAGGATGTTGACGAAGGAGACCGACCTTAAAGATCGTAAGATTTCACAACCAGGACATATTATTGACTTCATGGACATTAAAATGGGTAAAGGAACTTCGTCGACCAGTATTTTTTCCAAGGTTTCCACATCAAATAGCATGTAA 1095 42.47 MKFRFLLSSCCSSRSLAAMENSRHDRQDNEGFRVYSYNELKSATNGFSAANKVGEGGFGTVYKGRLRDGRKIAVKVLSVEVESMRGEREFIAELTSLSNIRHENLVELKGFYVDGSQRYLVYDYMENNSLAYALQGVGENRMILSWQSRKDILIGVARGLAYLHEEVDPHIVHRDIKAGNILLDHNFTPKVADFGLAKLLTENLSHVSTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRATVDFDLERGEHHLVQKVWEHYKANELVKLIDPMLDMDFRKEEAVRFMKIGLLCVQENTMKRPQMSLTVRMLTKETDLKDRKISQPGHIIDFMDIKMGKGTSSTSIFSKVSTSNSM 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42658159 42659752 + Lag0012611.1 Lac1g2119 595690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2119 364 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 22 356 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lac1g2119 364 CDD STKc_IRAK 53 322 - -
Lac1g2119 364 Gene3D Phosphorylase Kinase; domain 1 9 124 - -
Lac1g2119 364 FunFam Putative LRR receptor-like serine/threonine-protein kinase 125 332 - -
Lac1g2119 364 Pfam Protein kinase domain 49 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2119 364 SMART serkin_6 47 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2119 364 FunFam serine/threonine-protein kinase PBS1-like 14 124 - -
Lac1g2119 364 ProSiteProfiles Protein kinase domain profile. 47 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2119 364 SUPERFAMILY Protein kinase-like (PK-like) 31 331 IPR011009 -
Lac1g2119 364 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524(InterPro)
Lac1g2119 364 Gene3D Transferase(Phosphotransferase) domain 1 125 335 - -
Lac1g2119 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2119 Lac-Chr1:42658159 Lac5g2349 Lac-Chr5:42133937 5.60E-102 dispersed
Lac1g2119 Lac-Chr1:42658159 Lac2g1158 Lac-Chr2:9264824 2.60E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85904 PF00069 Pkinase 4.50E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2119 - - - 0.0