Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2122 ATGAGTACTTTTTCCGATTGTTTACCGGAGAACCTTGACCTGTACGTCGGCTTCAACTTCATGCCGACCGATCACATTCTTCTTCAGCATTATCTTTTCAACAAGCTTCACGGCCTCCCTTACTCACGCGCCGTCGTCTTCGACTGCGATCTCTACGGTGCCCACGAGCCATGGCACATTTGGAAACATTTTCAAGGCGTCGACGGCACAGATCTCTACTTCTTCACTCAACTCAAGAAATCCACCAACAATTCTGGACACTTATCTGCTCATATCACCCGCAAGATCGGCTCCGCCGGCGGCACTTGGAGCGGCGAGAACTCCGCCACTCCTGTTTTTGCCCATGAAAATGATGATGAAATAATCGGCTATTGCAAGCGCTTCAGGTACGAGAATCCTCAATTACCGGAACATCATGGTGAATGGATTATGCATGAATATAGCTTGCACAAGAATTTGATAAGCAACTGTCCAGATTCGAATTATGTTTTGTGTCGAATGAGGAAGAATGAAAGACCCAAAAGAAAAGCCGAGAAAAGATGTTTCTCTAATATTGAGTCGATGAAGAATAGAGTCATGACACCTAAGGTTAATGATATTGAGAAAAATGAAAGATGTTTGTCTGAGCCACAGCCTATTGAGCAAAGAGTTGTGGCACCTAAGATGATCTACAACAAGCCTTATGAGCCTGAGATACCCACCAACCAATTTGTTAGTGATGTGTCTTGTATGCGTGAGACCATCATCAACCAAGGTACTAATGATGTGTCTTCCATGCATCATACAACAATCCATCAGTGTACCACTAATGTGCCTTTTGTGTTTGAGATGAGTACCACAAACCAAGGTACCAATGATGTGCCTAATGATGTGCTTTATGGGCATGACATGAATAATGATGAGCTCGAGCTTTGGATTTCAGAGATGTGTGTCGACCCTGCTATTTATAATGATCCCCAAATCAAAATTTCATCATCATCATCGATCTTCACTCACTCTGCAACTGCTCTGCTACTCCTCTGTTCCAAAGGCGGAGCCATGTCTAAGGATGTTGAAGCCGGAGGCCGTGGCGGGTTTTCTGCCGGCGAATACCTCGACCAGCCTCCGGCTCCGTTGGTCGACGCCGACGAGCTTTTGCGCTGGTCGTTTTACAGGGCCGTCATCGCTGAGTTCGTTGCCACGCTTTTGTTTCTGTACGTCGGAGTTCTCACTGTGATTGGTAATCAGAGTCAGTCTTCCGCCGCCCAATGCGGCGGCGTTGGCGTTCTCGGGATTGCTTGGGCGTTCGGCAGCACCATCTTCGTTCTCGTTTACTGTACCGCCGGCATTTCTGGAGGACATATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGGTCGGAAGGTTTCATTGGTCAGAACTCTACTGTACATAGCAGCTCAGTGTTTAGGAGCCATTTGTGGGTGTGGCCTGGTGAAGTCATTAAAGAAGGCCAACTTCAATGCCTTCGGCGGGGGAGCCACCGAGCTCGCCGACGGCTTCACCCCCGGCGCCGGCCTCGCCGCCGAGATCATCGGCACCTTCGTTCTTGTATACACCGTCTTCTCTGCCACCGATCCCAAGAGAAAAGCGAGAGATTCCCACGTTCCTGTTCTGGCGCCGCTCCCAATTGGGTTCGCCGTGTTCGTGGTGAATTTGGCCACCATTCCAGTCACCGGCGCCGGTATCAACCCGGCTCGAAGCTTCGGCTCTGCAGTCATGTTCAACAAACACAAAGCTTGGGATAACCATTGGATATTCTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAGACCTTGAGATCCTTCAGGAGTTCCTCAAGTTAA 1887 48.75 MSTFSDCLPENLDLYVGFNFMPTDHILLQHYLFNKLHGLPYSRAVVFDCDLYGAHEPWHIWKHFQGVDGTDLYFFTQLKKSTNNSGHLSAHITRKIGSAGGTWSGENSATPVFAHENDDEIIGYCKRFRYENPQLPEHHGEWIMHEYSLHKNLISNCPDSNYVLCRMRKNERPKRKAEKRCFSNIESMKNRVMTPKVNDIEKNERCLSEPQPIEQRVVAPKMIYNKPYEPEIPTNQFVSDVSCMRETIINQGTNDVSSMHHTTIHQCTTNVPFVFEMSTTNQGTNDVPNDVLYGHDMNNDELELWISEMCVDPAIYNDPQIKISSSSSIFTHSATALLLLCSKGGAMSKDVEAGGRGGFSAGEYLDQPPAPLVDADELLRWSFYRAVIAEFVATLLFLYVGVLTVIGNQSQSSAAQCGGVGVLGIAWAFGSTIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLVRTLLYIAAQCLGAICGCGLVKSLKKANFNAFGGGATELADGFTPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNKHKAWDNHWIFWVGPFIGAAMAAIYHEFVLRGGAAKTLRSFRSSSS 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42679618 42683900 - Lag0012614.1 Lac1g2122 595693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2122 628 Gene3D Glycerol uptake facilitator protein. 370 628 IPR023271 -
Lac1g2122 628 Gene3D NAC domain 23 174 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2122 628 Pfam Major intrinsic protein 378 608 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2122 628 CDD MIP 385 611 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2122 628 SUPERFAMILY NAC domain 7 169 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2122 628 ProSitePatterns MIP family signature. 447 455 IPR022357 -
Lac1g2122 628 FunFam Probable aquaporin PIP2-8 370 628 - -
Lac1g2122 628 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 348 625 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lac1g2122 628 Pfam No apical meristem (NAM) protein 16 149 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2122 628 SUPERFAMILY Aquaporin-like 377 613 IPR023271 -
Lac1g2122 628 PRINTS Major intrinsic protein family signature 429 453 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2122 628 PRINTS Major intrinsic protein family signature 591 611 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2122 628 PRINTS Major intrinsic protein family signature 385 404 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2122 628 PRINTS Major intrinsic protein family signature 551 573 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2122 628 PRINTS Major intrinsic protein family signature 515 533 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2122 628 PRINTS Major intrinsic protein family signature 466 485 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2122 628 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2122 628 NCBIfam MIP family channel protein 389 607 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2514 Lac-Chr11:41241658 Lac1g2122 Lac-Chr1:42679618 9.40E-53 dispersed
Lac11g2515 Lac-Chr11:41258249 Lac1g2122 Lac-Chr1:42679618 4.80E-42 dispersed
Lac1g2122 Lac-Chr1:42679618 Lac1g2125 Lac-Chr1:42706284 2.60E-123 dispersed
Lac1g2122 Lac-Chr1:42679618 Lac1g2124 Lac-Chr1:42694800 3.00E-119 proximal
Lac10g1035 Lac-Chr10:8421287 Lac1g2122 Lac-Chr1:42679618 2.00E-26 transposed
Lac10g3042 Lac-Chr10:44942971 Lac1g2122 Lac-Chr1:42679618 2.10E-31 transposed
Lac11g1078 Lac-Chr11:12616973 Lac1g2122 Lac-Chr1:42679618 8.40E-52 transposed
Lac1g1312 Lac-Chr1:33155144 Lac1g2122 Lac-Chr1:42679618 1.10E-59 transposed
Lac2g1443 Lac-Chr2:12359449 Lac1g2122 Lac-Chr1:42679618 2.70E-23 transposed
Lac3g1230 Lac-Chr3:10466725 Lac1g2122 Lac-Chr1:42679618 1.30E-29 transposed
Lac5g1801 Lac-Chr5:35963394 Lac1g2122 Lac-Chr1:42679618 2.50E-64 transposed
Lac1g1720 Lac-Chr1:38677439 Lac1g2122 Lac-Chr1:42679618 2.00E-10 transposed
Lac1g2122 Lac-Chr1:42679618 Lac10g3020 Lac-Chr10:44771310 9.60E-110 wgd
Lac1g2122 Lac-Chr1:42679618 Lac8g2417 Lac-Chr8:42264865 3.10E-116 wgd
Lac1g2122 Lac-Chr1:42679618 Lac9g2580 Lac-Chr9:44358020 4.50E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23268 PF00230 MIP 3.70E-79 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2122 K09872 - csv:101215842 501.13