Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2122 | ATGAGTACTTTTTCCGATTGTTTACCGGAGAACCTTGACCTGTACGTCGGCTTCAACTTCATGCCGACCGATCACATTCTTCTTCAGCATTATCTTTTCAACAAGCTTCACGGCCTCCCTTACTCACGCGCCGTCGTCTTCGACTGCGATCTCTACGGTGCCCACGAGCCATGGCACATTTGGAAACATTTTCAAGGCGTCGACGGCACAGATCTCTACTTCTTCACTCAACTCAAGAAATCCACCAACAATTCTGGACACTTATCTGCTCATATCACCCGCAAGATCGGCTCCGCCGGCGGCACTTGGAGCGGCGAGAACTCCGCCACTCCTGTTTTTGCCCATGAAAATGATGATGAAATAATCGGCTATTGCAAGCGCTTCAGGTACGAGAATCCTCAATTACCGGAACATCATGGTGAATGGATTATGCATGAATATAGCTTGCACAAGAATTTGATAAGCAACTGTCCAGATTCGAATTATGTTTTGTGTCGAATGAGGAAGAATGAAAGACCCAAAAGAAAAGCCGAGAAAAGATGTTTCTCTAATATTGAGTCGATGAAGAATAGAGTCATGACACCTAAGGTTAATGATATTGAGAAAAATGAAAGATGTTTGTCTGAGCCACAGCCTATTGAGCAAAGAGTTGTGGCACCTAAGATGATCTACAACAAGCCTTATGAGCCTGAGATACCCACCAACCAATTTGTTAGTGATGTGTCTTGTATGCGTGAGACCATCATCAACCAAGGTACTAATGATGTGTCTTCCATGCATCATACAACAATCCATCAGTGTACCACTAATGTGCCTTTTGTGTTTGAGATGAGTACCACAAACCAAGGTACCAATGATGTGCCTAATGATGTGCTTTATGGGCATGACATGAATAATGATGAGCTCGAGCTTTGGATTTCAGAGATGTGTGTCGACCCTGCTATTTATAATGATCCCCAAATCAAAATTTCATCATCATCATCGATCTTCACTCACTCTGCAACTGCTCTGCTACTCCTCTGTTCCAAAGGCGGAGCCATGTCTAAGGATGTTGAAGCCGGAGGCCGTGGCGGGTTTTCTGCCGGCGAATACCTCGACCAGCCTCCGGCTCCGTTGGTCGACGCCGACGAGCTTTTGCGCTGGTCGTTTTACAGGGCCGTCATCGCTGAGTTCGTTGCCACGCTTTTGTTTCTGTACGTCGGAGTTCTCACTGTGATTGGTAATCAGAGTCAGTCTTCCGCCGCCCAATGCGGCGGCGTTGGCGTTCTCGGGATTGCTTGGGCGTTCGGCAGCACCATCTTCGTTCTCGTTTACTGTACCGCCGGCATTTCTGGAGGACATATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGGTCGGAAGGTTTCATTGGTCAGAACTCTACTGTACATAGCAGCTCAGTGTTTAGGAGCCATTTGTGGGTGTGGCCTGGTGAAGTCATTAAAGAAGGCCAACTTCAATGCCTTCGGCGGGGGAGCCACCGAGCTCGCCGACGGCTTCACCCCCGGCGCCGGCCTCGCCGCCGAGATCATCGGCACCTTCGTTCTTGTATACACCGTCTTCTCTGCCACCGATCCCAAGAGAAAAGCGAGAGATTCCCACGTTCCTGTTCTGGCGCCGCTCCCAATTGGGTTCGCCGTGTTCGTGGTGAATTTGGCCACCATTCCAGTCACCGGCGCCGGTATCAACCCGGCTCGAAGCTTCGGCTCTGCAGTCATGTTCAACAAACACAAAGCTTGGGATAACCATTGGATATTCTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAGACCTTGAGATCCTTCAGGAGTTCCTCAAGTTAA | 1887 | 48.75 | MSTFSDCLPENLDLYVGFNFMPTDHILLQHYLFNKLHGLPYSRAVVFDCDLYGAHEPWHIWKHFQGVDGTDLYFFTQLKKSTNNSGHLSAHITRKIGSAGGTWSGENSATPVFAHENDDEIIGYCKRFRYENPQLPEHHGEWIMHEYSLHKNLISNCPDSNYVLCRMRKNERPKRKAEKRCFSNIESMKNRVMTPKVNDIEKNERCLSEPQPIEQRVVAPKMIYNKPYEPEIPTNQFVSDVSCMRETIINQGTNDVSSMHHTTIHQCTTNVPFVFEMSTTNQGTNDVPNDVLYGHDMNNDELELWISEMCVDPAIYNDPQIKISSSSSIFTHSATALLLLCSKGGAMSKDVEAGGRGGFSAGEYLDQPPAPLVDADELLRWSFYRAVIAEFVATLLFLYVGVLTVIGNQSQSSAAQCGGVGVLGIAWAFGSTIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLVRTLLYIAAQCLGAICGCGLVKSLKKANFNAFGGGATELADGFTPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNKHKAWDNHWIFWVGPFIGAAMAAIYHEFVLRGGAAKTLRSFRSSSS | 628 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 42679618 | 42683900 | - | Lag0012614.1 | Lac1g2122 | 595693 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2122 | 628 | Gene3D | Glycerol uptake facilitator protein. | 370 | 628 | IPR023271 | - | |
Lac1g2122 | 628 | Gene3D | NAC domain | 23 | 174 | IPR036093 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac1g2122 | 628 | Pfam | Major intrinsic protein | 378 | 608 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac1g2122 | 628 | CDD | MIP | 385 | 611 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac1g2122 | 628 | SUPERFAMILY | NAC domain | 7 | 169 | IPR036093 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac1g2122 | 628 | ProSitePatterns | MIP family signature. | 447 | 455 | IPR022357 | - | |
Lac1g2122 | 628 | FunFam | Probable aquaporin PIP2-8 | 370 | 628 | - | - | |
Lac1g2122 | 628 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 348 | 625 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
Lac1g2122 | 628 | Pfam | No apical meristem (NAM) protein | 16 | 149 | IPR003441 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac1g2122 | 628 | SUPERFAMILY | Aquaporin-like | 377 | 613 | IPR023271 | - | |
Lac1g2122 | 628 | PRINTS | Major intrinsic protein family signature | 429 | 453 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac1g2122 | 628 | PRINTS | Major intrinsic protein family signature | 591 | 611 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac1g2122 | 628 | PRINTS | Major intrinsic protein family signature | 385 | 404 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac1g2122 | 628 | PRINTS | Major intrinsic protein family signature | 551 | 573 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac1g2122 | 628 | PRINTS | Major intrinsic protein family signature | 515 | 533 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac1g2122 | 628 | PRINTS | Major intrinsic protein family signature | 466 | 485 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac1g2122 | 628 | ProSiteProfiles | NAC domain profile. | 14 | 170 | IPR003441 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac1g2122 | 628 | NCBIfam | MIP family channel protein | 389 | 607 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2514 | Lac-Chr11:41241658 | Lac1g2122 | Lac-Chr1:42679618 | 9.40E-53 | dispersed | |
Lac11g2515 | Lac-Chr11:41258249 | Lac1g2122 | Lac-Chr1:42679618 | 4.80E-42 | dispersed | |
Lac1g2122 | Lac-Chr1:42679618 | Lac1g2125 | Lac-Chr1:42706284 | 2.60E-123 | dispersed | |
Lac1g2122 | Lac-Chr1:42679618 | Lac1g2124 | Lac-Chr1:42694800 | 3.00E-119 | proximal | |
Lac10g1035 | Lac-Chr10:8421287 | Lac1g2122 | Lac-Chr1:42679618 | 2.00E-26 | transposed | |
Lac10g3042 | Lac-Chr10:44942971 | Lac1g2122 | Lac-Chr1:42679618 | 2.10E-31 | transposed | |
Lac11g1078 | Lac-Chr11:12616973 | Lac1g2122 | Lac-Chr1:42679618 | 8.40E-52 | transposed | |
Lac1g1312 | Lac-Chr1:33155144 | Lac1g2122 | Lac-Chr1:42679618 | 1.10E-59 | transposed | |
Lac2g1443 | Lac-Chr2:12359449 | Lac1g2122 | Lac-Chr1:42679618 | 2.70E-23 | transposed | |
Lac3g1230 | Lac-Chr3:10466725 | Lac1g2122 | Lac-Chr1:42679618 | 1.30E-29 | transposed | |
Lac5g1801 | Lac-Chr5:35963394 | Lac1g2122 | Lac-Chr1:42679618 | 2.50E-64 | transposed | |
Lac1g1720 | Lac-Chr1:38677439 | Lac1g2122 | Lac-Chr1:42679618 | 2.00E-10 | transposed | |
Lac1g2122 | Lac-Chr1:42679618 | Lac10g3020 | Lac-Chr10:44771310 | 9.60E-110 | wgd | |
Lac1g2122 | Lac-Chr1:42679618 | Lac8g2417 | Lac-Chr8:42264865 | 3.10E-116 | wgd | |
Lac1g2122 | Lac-Chr1:42679618 | Lac9g2580 | Lac-Chr9:44358020 | 4.50E-115 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23268 | PF00230 | MIP | 3.70E-79 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2122 | K09872 | - | csv:101215842 | 501.13 |