Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2124 ATGGCCAAGGACTCTGAACCCGGAGGCTTCGCCGCCAAGGACTACCACGACCCACCTCCCGCGCCTCTCATCGACGCTGAGGAGTTCACTCAGTGGTCCTTTTACAGAGCCATCATCGCCGAGTTCATCGCCACGCTTCTCTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTACAGCAGCCAGTCTGATGTCAAAAACGGCGGCCAAATCTGCGGCGGCGTCGGCATTCTCGGCATCGCTTGGGCCTTCGGTGGAATGATCTTCGTTCTCGTCTACTGCACCGCTGGAATTTCCGGTGGCCATATCAATCCGGCCGTGACATTTGGGTTGTTTTTGGCTCGGAAAGTGTCGTTGGTGAGGGCTGTATTGTACATGGTGGCTCAGTGTCTTGGTGCCATTTGTGGATGTGCGTTGGTCAAATCGTTCCAGAAGGGTCTCTACAATCGCTACGGCGGTGGAGCCAATTCGCTCGCCGACGGTTACAGTACCGGCACCGGCTTAGCCGCTGAGATCATCGGAACCTTCGTTCTTGTCTACACTGTCTTCTCTGCGACAGATCCAAAGAGGAGCGCAAGAGATTCTCATGTTCCTGTTCTAGCACCACTTCCAATTGGGTTCGCCGTGTTCATGGTCCACCTGGCCACCATTCCGGTCACCGGCACCGGTATCAACCCAGCTCGAAGCTTTGGTGCTGCGGTGGTCATCAACCGGAGCAAGCCCTGGGATGACCAGTGGATTTTCTGGGTCGGACCCTTCATCGGAGCCGCCATCGCTGCGTTTTATCACCAGTTCATTTTGAGAGCTGGAGCTGTTAAAGCTCTGGGATCGTTCAGGAGTACCCACAGCGTTTGA 855 55.32 MAKDSEPGGFAAKDYHDPPPAPLIDAEEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDVKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKSFQKGLYNRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVINRSKPWDDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTHSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42694800 42695948 - Lag0012616.1 Lac1g2124 595695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2124 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2124 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Lac1g2124 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Lac1g2124 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Lac1g2124 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Lac1g2124 284 NCBIfam MIP family channel protein 40 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2124 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lac1g2124 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2124 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2124 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2124 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2124 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2124 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2124 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0708 Lac-Chr13:5428713 Lac1g2124 Lac-Chr1:42694800 6.50E-90 dispersed
Lac13g0709 Lac-Chr13:5432968 Lac1g2124 Lac-Chr1:42694800 5.20E-31 dispersed
Lac1g2124 Lac-Chr1:42694800 Lac1g2126 Lac-Chr1:42710492 1.30E-149 dispersed
Lac1g2122 Lac-Chr1:42679618 Lac1g2124 Lac-Chr1:42694800 3.00E-119 proximal
Lac1g2124 Lac-Chr1:42694800 Lac1g2125 Lac-Chr1:42706284 2.30E-143 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2124 K09872 - csv:101214884 536.184