Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2125 ATGTCGAAGGATCTTGAAGGCGGAGGGCGTGGTGGGTTCAGCGGGAAGGACTACGAAGACCCACCCCCAGCCCCATTGATCGACGCGCAGGAGTTTGCTCAGTGGTCCTTTTACAGAGCCATTATAGCCGAGTTCGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTCACTGTCATTGGATATCAGGTTCAGAGCGATGATAAGAATGGAGGTCAGATTTGCGGCGGCGTCGGCATTTTGGGCATCGCTTGGGCCTTTGGCGGCATGATTTTTGTTCTCGTTTACTGCACCGCCGGAATTTCTGGGGGGCATATAAATCCGGCCGTGACGTTTGGGCTGTTTTTGGCACGGAAGGTGTCGTTGGTGCGAGCCGTATTGTACATGGCGGCTCAGAGTTTGGGTGCCATTTGTGGCTGTGCCTTGGTGAAAGCTTTCCAGAACGCTCACTACAATGAGTACGGAGGTGGAGCCAATTCACTTGCCGACGGCTACAGCACCGGCACCGGATTGGCTGCCGAGATCATTGGAACCTTCGTTCTCGTTTACACTGTCTTTTCGGCTACTGATCCCAAGAGAAATGCCAGAGATTCCCACGTCCCGGTTTTGGCGCCACTCCCAATCGGGTTCGCGGTGTTCATGGTTCACTTGGCCACAATTCCGATCACTGGCACAGGTATCAACCCAGCTAGAAGCTTTGGAGCTGCAGTGGTATTCAACAAATCCAAGCCATGGGATGATCAATGGATCTTTTGGGTTGGACCATTCATTGGCGCTGCCATTGCTGCAATCTATCACCAATTCATATTAAGAGCAGGAGCAGCCAAAGCTATTGGATCATTTGCAAGCTCCTAA 855 51.58 MSKDLEGGGRGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYQVQSDDKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMAAQSLGAICGCALVKAFQNAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQWIFWVGPFIGAAIAAIYHQFILRAGAAKAIGSFASS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42706284 42707398 + Lag0012617.1 Lac1g2125 595696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2125 284 MobiDBLite consensus disorder prediction 1 21 - -
Lac1g2125 284 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lac1g2125 284 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Lac1g2125 284 FunFam Probable aquaporin PIP1-2 24 284 - -
Lac1g2125 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 12 281 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lac1g2125 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Lac1g2125 284 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2125 284 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2125 284 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2125 284 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2125 284 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2125 284 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2125 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2125 284 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2125 284 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2122 Lac-Chr1:42679618 Lac1g2125 Lac-Chr1:42706284 2.60E-123 dispersed
Lac1g2125 Lac-Chr1:42706284 Lac9g2580 Lac-Chr9:44358020 3.50E-128 dispersed
Lac1g2124 Lac-Chr1:42694800 Lac1g2125 Lac-Chr1:42706284 2.30E-143 tandem
Lac1g2125 Lac-Chr1:42706284 Lac1g2126 Lac-Chr1:42710492 1.50E-150 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2125 K09872 - csv:101216085 534.258