Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2126 ATGTCCAAGGATCTCGAAGCCGGTGGGTTCGCCGCCAAGGACTACCAAGACCCACCTCCAGCCCCATTGATCGACGCCCAGGAGTTCGCTCAATGGTCTTTTTACAGAGCCATCATCGCCGAGTTCGTCGCCACGCTTTTGTTTTTGTATGTCACTGTTCTCACCGTCATTGGCTACAGCACCCAGTCCGACACCAAAAACGGCGGCCAAATCTGCGGCGGCGTCGGCATTCTCGGCATCGCTTGGGCCTTCGGCGGCATGATTTTCGTTCTTGTTTACTGCACCGCTGGAATTTCCGGTGGGCACATTAACCCGGCGGTGACTTTTGGGTTGTTTTTGGCTCGGAAAGTATCCCTAGTTAGAGCAGTTCTTTACATGGCGGCTCAATGTTTGGGCGCCATTTGTGGATGTGCATTGGTGAAATCGTTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCGCTCGCCGATGGGTACAGCACCGGCACCGGCTTGGCCGCCGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGATCCCAAGAGGAACGCTAGAGATTCTCACGTCCCTGTTTTGGCACCACTCCCAATTGGGTTCGCGGTGTTTATGGTTCATTTGGCCACCATTCCGATCACTGGCACTGGCATTAACCCAGCTCGAAGCTTTGGAGCTGCTGTGATCTTTAACAAAGATAAGCCCTGGGACGACCAGTGGATCTTTTGGGTTGGGCCGTTCATTGGAGCTGCCATTGCTGCAATCTATCACCAAATCATATTGAGGGCTGGCGCGGTTAAAGCTCTGGGATCGTTCAGAAGCTCCACCGCCGTATAA 855 53.57 MSKDLEAGGFAAKDYQDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYSTQSDTKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMAAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIILRAGAVKALGSFRSSTAV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42710492 42711630 + Lag0012618.1 Lac1g2126 595697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2126 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2126 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2126 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2126 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2126 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2126 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2126 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2126 284 NCBIfam MIP family channel protein 40 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2126 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Lac1g2126 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lac1g2126 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Lac1g2126 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Lac1g2126 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2126 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3020 Lac-Chr10:44771310 Lac1g2126 Lac-Chr1:42710492 3.20E-124 dispersed
Lac1g1720 Lac-Chr1:38677439 Lac1g2126 Lac-Chr1:42710492 3.00E-11 dispersed
Lac1g2124 Lac-Chr1:42694800 Lac1g2126 Lac-Chr1:42710492 1.30E-149 dispersed
Lac1g2126 Lac-Chr1:42710492 Lac9g2580 Lac-Chr9:44358020 4.00E-132 dispersed
Lac1g2125 Lac-Chr1:42706284 Lac1g2126 Lac-Chr1:42710492 1.50E-150 tandem
Lac1g2126 Lac-Chr1:42710492 Lac1g2127 Lac-Chr1:42714033 1.00E-130 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2126 K09872 - csv:101215366 540.036