Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2127 ATGTCTAACAATGTTAATGGCGGCTCGGCGGCCAAGGACTACCAAGATCCACCTCCAGCCCCATTGATCGACGCTGAGGAGTTCATTCAGTGGTCATTTTACAGAGCCATCATCGCCGAGTTCGTTGCCACGCTTCTGTTCTTGTACATTCTCGTTCTCACTGTGATTGGCGCTTCTAATCAGTCCGAAACCGGGAAATGCGGCGGCGTCGGCGCTTTGGGCATCGCCTGGGCAGTCGGCGGCATGATCTTCGTCCTCGTTTACTGCACCGCTGGAATTTCCGGAGGGCATATTAACCCGGCGGTGACGTTTGGGCTGTTGTTGGCTCGAAAAATCTCTGTAATCAGAGCTGTGTTTTACATTGTGGCTCAATGTTTGGGCGCCATTTGTGGGTGTGCGTTGGCTAAATCATTTCAGAAGGCATTCTACGTTCGGTTCGGCGGTGGAGCCAATATGCTCCATGAAGGGTACAGCACCGGCACCGGCTTAGCCGCAGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACCGATCCCAAGAGAAACGCCAGAGATTCTCACGTCCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTCGTGGTTCATTTGGCCACCATTCCGATCACCGGCACCGGCATAAACCCAGCTCGAAGCTTAGGAGCTGCAGTGGTCTTTAACAGAGCTGCGGCCTGGGATCATCATTGGATCTTTTGGGTTGGGCCCTTCGTCGGAGCTGCAATTGCTGCAATTTATTATCAATTCGTAATAAGGGCAGGGGCAGTTAAAGCTCTGGGATCGTTTAGAAGTTCCTCCGCCGTATAA 840 52.5 MSNNVNGGSAAKDYQDPPPAPLIDAEEFIQWSFYRAIIAEFVATLLFLYILVLTVIGASNQSETGKCGGVGALGIAWAVGGMIFVLVYCTAGISGGHINPAVTFGLLLARKISVIRAVFYIVAQCLGAICGCALAKSFQKAFYVRFGGGANMLHEGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFVVHLATIPITGTGINPARSLGAAVVFNRAAAWDHHWIFWVGPFVGAAIAAIYYQFVIRAGAVKALGSFRSSSAV 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42714033 42715115 + Lag0012619.1 Lac1g2127 595698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2127 279 NCBIfam MIP family channel protein 39 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2127 279 SUPERFAMILY Aquaporin-like 27 263 IPR023271 -
Lac1g2127 279 PRINTS Major intrinsic protein family signature 241 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2127 279 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2127 279 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2127 279 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2127 279 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2127 279 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2127 279 FunFam Probable aquaporin PIP1-2 20 277 - -
Lac1g2127 279 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 275 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lac1g2127 279 Pfam Major intrinsic protein 29 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2127 279 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Lac1g2127 279 Gene3D Glycerol uptake facilitator protein. 20 279 IPR023271 -
Lac1g2127 279 CDD MIP 35 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2127 Lac-Chr1:42714033 Lac9g2580 Lac-Chr9:44358020 2.20E-122 dispersed
Lac1g2126 Lac-Chr1:42710492 Lac1g2127 Lac-Chr1:42714033 1.00E-130 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2127 K09872 - csv:101215604 472.241