Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2132 ATGATTACGTTTATGGATTCGAAAGAGAAATTGAAGGAGATGGAGAAATGCTTAGACCCTCAGCTATGGCATGCCTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCTCAAGGCCATGCCGAGCATGCGTGTGCGCCAGTTGATTTCAGGAGCTGTCCCAAGGTTCCTCCGTATACCCTTTGCAAAGTTTCTGCCATCAAGTTCCTTGCCGATCCTGACACGGATGAGGTCTTTGCCAAAGTTAGGTTGATTCCCATAAATGGAAGTGAACTAGATTTTGAAGATGATGGAATTGGGAGGCTTAATGGGTCTGAACAGGATAAGCCAACTTCTTTTGCAAAGACACTAACTCAGTCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCGAGGTATTGTGCAGAAACAATCTTCCCTCGGTTGGATTATTCTGCTGATCCGCCTGTTCAGACGATTCTTGCTAAGGATGTTCATGGTGAGACATGGAAATTTAGGCACATTTACAGGGGGACGCCTCGGCGGCATCTTTTGACCACTGGGTGGAGTACTTTTGTTAATCATAAGAAGCTTGTTGCGGGTGATTCCATTGTTTTCTTGAGGGCAGAGAATGGAGATCTCTGCGTCGGGATTAGACGGGCGAAGAGGGGAATTGGAGATGGACTGGAGTCGTCCAGTGGATGGAATCCAGCAGGTGGGAACTGTGCTGTCCCGTATGGAGCGTTCTCATCGTTTTTGAGGGAAGATGAAAACAGACTGACGAGGTCAGCTAATGGCTTGAATGGAAATGGAAGTCTTTTGGGAAAGGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTACACTTGCTTCAAATGGGCAGCCCTTTGAAATAGTATACTACCCTAGAGCTAGTACTCCTGAGTTCTGCGTCAAGGCAGGACTGGTGAAAGCAGCATTGCAGATTCGGTGGTGCTCGGGCATGAGGTTCAAGATGGCCTTTGAAACTGAGGACTCTTCACGGATAAGCTGGTTCATGGGTACCATTAACTTGGTTCAGGTTGCTGACCCGCTGCGCTGGCCTGAATCACCATGGAGGCTTCTACAGGTTACTTGGGATGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCATGGTTGGTCGAATTGGTATCGAACATGTCTCCTATTCACCTTGCCCCCTTCTCACCTCCAAGGAAAAAGTTCAGATATCCACAACACCCTGATTTCCCCCTCGATAACCAGCCTTCTATGCCATCGTTCTCTAGTTATCTCCATGGGCCCGGCAGCCCCTTCGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTCCATCTCAGTAAACTGCAGTCAGGTCTGTTTCCAATTGGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATACAATGACTGAAAAACCAAGTATGAGTGAAAATGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCGTCGAAGAAATTTGACGACGTGAAGACTCCCCAGCTAATACTTTTTGGCCGACCCATACTTACAGAATTGCAGATGTCTCAAAGCTGCTCTGGTGATACTGTTTCTTCGGTTGGTACTGGAAATAGTTCGTCAGATGGCAACAGAGATAAAATGGCAAATTTCTCTGATGGTTCTGGATCTGCTCTGCATCAAAAAGGCCTACCAGAACGCTCGTCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGATGTCGAGCCTAACTTGGATACTGGCCACTGTAAAGTCTTTATGGAATCAGAAGATGTAGGTCGCACCCTTGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTATAGAAAACTTGGAAATATGTTTGGTATAGATAATTCAGAGACATTGAACCATGTCTTGTACCGCGATGTTTCCGGTGCTGTCAAGCATGTCGGTGACGAACAATTCAGTGACTTCATCAAGACAGCAAGAAGATTGACTATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCTTAG 2097 46.35 MITFMDSKEKLKEMEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHACAPVDFRSCPKVPPYTLCKVSAIKFLADPDTDEVFAKVRLIPINGSELDFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGLESSSGWNPAGGNCAVPYGAFSSFLREDENRLTRSANGLNGNGSLLGKGKVKPESVIEAATLASNGQPFEIVYYPRASTPEFCVKAGLVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINLVQVADPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKFRYPQHPDFPLDNQPSMPSFSSYLHGPGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFPIGYRSLDPAAGSTRLSGNTMTEKPSMSENVSCLLTMAHSTQASKKFDDVKTPQLILFGRPILTELQMSQSCSGDTVSSVGTGNSSSDGNRDKMANFSDGSGSALHQKGLPERSSCENFQWYKDNRQDVEPNLDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHVLYRDVSGAVKHVGDEQFSDFIKTARRLTILTDSGSNNVGA 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42764286 42766769 - Lag0012624.1 Lac1g2132 595703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2132 698 MobiDBLite consensus disorder prediction 550 586 - -
Lac1g2132 698 Gene3D - 610 696 - -
Lac1g2132 698 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677(InterPro)
Lac1g2132 698 Gene3D - 324 398 - -
Lac1g2132 698 FunFam Auxin response factor 118 222 - -
Lac1g2132 698 FunFam Auxin response factor 325 398 - -
Lac1g2132 698 Gene3D - 118 222 IPR015300 -
Lac1g2132 698 MobiDBLite consensus disorder prediction 550 580 - -
Lac1g2132 698 Pfam Auxin response factor 287 370 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac1g2132 698 CDD B3_DNA 119 220 IPR003340 GO:0003677(InterPro)
Lac1g2132 698 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677(InterPro)
Lac1g2132 698 SUPERFAMILY DNA-binding pseudobarrel domain 114 224 IPR015300 -
Lac1g2132 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 694 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac1g2132 698 ProSiteProfiles PB1 domain profile. 612 692 IPR053793 -
Lac1g2132 698 SMART B3_2 120 222 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2132 Lac-Chr1:42764286 Lac6g0864 Lac-Chr6:7584696 3.60E-97 dispersed
Lac1g2132 Lac-Chr1:42764286 Lac8g2412 Lac-Chr8:42232772 5.00E-224 wgd
Lac1g2132 Lac-Chr1:42764286 Lac9g2590 Lac-Chr9:44434178 3.50E-262 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23269 PF02362 B3 1.50E-21 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2132 K14486 - csv:101217039 1327.0