Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2137 ATGGCTGCTTCTCGTACATGGAGATCAGTCACAGTCAGATTCCAAGACGAGGAGCTCGAAAGCGGAGAAGAAGAATCGTTGAGAGTGTTTCCGGAGGATTACGACGATGGAATGGTGTTGGATCCAAGGATGGCGATGTTGAACAGATGGAACAGGGTTTTTCTGGTGGCTTGTTTGGTGTCGCTGTTCGTGGACCCGGTCTTCTTCTTTCTGCCGGTGGTCAAGGCGGAGGAGGGGTGCGTGGAAATGGGCGGAGGGCTCGCGGTGGCGCTCACGGTGGTGCGGTCGGCGGCGGATGCCTTCTACATAACGCAGATTCTGGTGAGGTTTAGGACGGCTTACGTGGCTCCGTCGTCGAGGATCTTTGGGAAAGGGGAGCTCGTCATTGATCCTTCCAAGATTGCTGCTAATTATCTTGTTTTCCACTTTTGGCTTGATTTTGCTGCTGCATTGCCTCTTCCTCAGGCATTCATATGGGTAGCAATCCCAAACATCAGGGGTTCAAACATGACCCCATGGTGTTACTTCCTTCGCTTCTCCATCCTCTTCCAATACTTCTTGAGGCTCTATCTCATCTTCCCTTTATGTGACCAAATCATTAATGCCACTGGAGTTTTGATGAAAACAGCATGGGCTGGGGCTGTTTATAATCTAATGCTCTTCATGCTAGCAAGCCACGTTTTGGGTTCGTGTTGGTACCTGTTATCCATTGGACGACAAATGGAATGTTGGAAAAAGGTTTGCCATTTGGGGCACTTGGATTGTCAATATGAGTTTTTTGATTGTAAAGCTGTGGGAAATCCAAATAGAGCTGCTTGGTTTGAAGCAAGCAATATCTCAAATCTTTGCCATCCAACTGCCACCACTTTCTTCCATTTTGGGATCTTTTCTGATTCTTTTGCCTCCACTTCTTCCACCTTCTTCAGTAGGTACTTCTATTGCTTTTGGTGGGGCTTGAGGAATTTAAGCTCTTTGGGACAAAATCTGCTGACAAGTAGCAACGTGGCGGAAATCAACTTCGCGATTGTGATAGCGATCGTGGGATTGGTGCTATTCGCACTTCTAATCGGAAATATGCAAACTTATCTTCAATCGACAACTTTGAGGCTGGAAGAGTGGAGGGTGAGGAGAAGGGACACAGAGCGATGGATGCACCACAGGCAGCTGCCGTATGAGCTGAAGGAAAGCGTTAGAAAATACGACCAATTCAGATGGATTGCTACTCGTGGGGTTGATGAAGAAGACATTCTTAAAGGCCTTCCTATGGACCTTAGACGAGACATCAAACGCCATCTTTGCCTCGACCTCGTTCGTCAGGTGCCACTGTTCAACGAGATGGAGGAGAGAATGTTGGATGCAATATGCGAAAGATTGAGACCCTGTTTAAGCACGTCCAACACCTGCCTAGTCCGCGAAGGCGACCCAGTCAACGAGATGCTCTTCATTATCCGCGGCCATCTCGACTCCCACACCACCAACGGCGGCCGCACCGGCTTCTTCAACTCCAGCCGCCTCGGCCCCACCGACTTCTGCGGCGAGGAGCTTCTCCCCTGGGCACTCGACCCCCGCCCCGCCGCCGTCCTCCCCTCCTCCACTCGCACCGTCAAGGCCATCACCGAAGTCGAGGCCTTCGCCCTCATCGCCGACGACCTCAAGTTCGTCGCCGCCCAGTTCCGCCGCCTCCACAGCAAGCAGCTCAGGTACACTTTCAGGTTCCACTCCCACCAGTGGCGGACCTGGGCCGCCTGTTTTATTCAGGCGGCTTGGTTCAGCTACAAGCGCCGGAAGGAGGCGGCGGAGGTGAAGAAGGAGATTGTTGTTGGAAGGAAGTTTGCGGCCAATTGTAGGAGGGTTGTCGGCCGTGGTGGGAGTGGCCGGCGTTGCGACGGTGGTGAGATGAATGCCGTTCATGGGTCGCTGTTGAAGCCTATTGAACCTGACTTCTCGGTTGAAGAAAGATGA 1962 51.94 MAASRTWRSVTVRFQDEELESGEEESLRVFPEDYDDGMVLDPRMAMLNRWNRVFLVACLVSLFVDPVFFFLPVVKAEEGCVEMGGGLAVALTVVRSAADAFYITQILVRFRTAYVAPSSRIFGKGELVIDPSKIAANYLVFHFWLDFAAALPLPQAFIWVAIPNIRGSNMTPWCYFLRFSILFQYFLRLYLIFPLCDQIINATGVLMKTAWAGAVYNLMLFMLASHVLGSCWYLLSIGRQMECWKKVCHLGHLDCQYEFFDCKAVGNPNRAAWFEASNISNLCHPTATTFFHFGIFSDSFASTSSTFFSRYFYCFWWGLRNLSSLGQNLLTSSNVAEINFAIVIAIVGLVLFALLIGNMQTYLQSTTLRLEEWRVRRRDTERWMHHRQLPYELKESVRKYDQFRWIATRGVDEEDILKGLPMDLRRDIKRHLCLDLVRQVPLFNEMEERMLDAICERLRPCLSTSNTCLVREGDPVNEMLFIIRGHLDSHTTNGGRTGFFNSSRLGPTDFCGEELLPWALDPRPAAVLPSSTRTVKAITEVEAFALIADDLKFVAAQFRRLHSKQLRYTFRFHSHQWRTWAACFIQAAWFSYKRRKEAAEVKKEIVVGRKFAANCRRVVGRGGSGRRCDGGEMNAVHGSLLKPIEPDFSVEER 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42805249 42808867 - Lag0012629.1 Lac1g2137 595708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2137 653 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 28 603 - -
Lac1g2137 653 ProSiteProfiles cAMP/cGMP binding motif profile. 442 527 IPR000595 -
Lac1g2137 653 SMART cnmp_10 442 573 IPR000595 -
Lac1g2137 653 FunFam Cyclic nucleotide-gated ion channel 1 440 558 - -
Lac1g2137 653 SUPERFAMILY cAMP-binding domain-like 372 565 IPR018490 -
Lac1g2137 653 PRINTS EAG/ELK/ERG potassium channel family signature 223 233 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac1g2137 653 PRINTS EAG/ELK/ERG potassium channel family signature 355 364 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac1g2137 653 PRINTS EAG/ELK/ERG potassium channel family signature 311 328 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac1g2137 653 PRINTS EAG/ELK/ERG potassium channel family signature 405 412 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac1g2137 653 PRINTS EAG/ELK/ERG potassium channel family signature 337 348 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac1g2137 653 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac1g2137 653 Pfam Ion transport protein 52 369 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2137 653 FunFam Cyclic nucleotide-gated ion channel 1 369 433 - -
Lac1g2137 653 SUPERFAMILY Voltage-gated potassium channels 49 364 - -
Lac1g2137 653 Gene3D Jelly Rolls 440 560 IPR014710 -
Lac1g2137 653 Gene3D - 53 366 - -
Lac1g2137 653 CDD CAP_ED 442 573 IPR000595 -
Lac1g2137 653 Gene3D Helix hairpin bin 370 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2137 Lac-Chr1:42805249 Lac2g0692 Lac-Chr2:5204642 7.00E-188 dispersed
Lac1g2137 Lac-Chr1:42805249 Lac9g2595 Lac-Chr9:44480023 4.60E-240 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2137 K05391 - csv:101221856 907.131