Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2141 ATGGCGGAAACCTGCGAGCAAAACGGCCACAACAACGGCGGCGAGTTCTGCCTCGGCGGCCGGAATAATGACCCGTTGAACTGGGGAGTGGCAGCGGAGTCGCTGAAGGGAAGCCATTTGGAGGAAGTGAAGCGGATGGTGGAGGAGTACCGGCGGCCGGTGGTGAAGCTGGGAGGAGAGACGCTGACGATAGCTCAGGTGGCTGCCATCGCCGCCCGGGACACCGGCGTGGCGGTGGAGCTGTCGGAGTCGGCGAGAGGCGGCGTCGAGGCGAGCAGTAACTGGGTGATGGAGAGCATGAACAAAGGGACTGATAGCTACGGCGTCACCACCGGCTTCGGCGCCACCTCCCACCGCCGGACTAAAGAGGGTGGCGCTCTGCAGAGGGAGCTCATACGATTTTTGAATGCGGGAGTATTTGGAAATGGCACTGAATCAAGTCATACTTTGCCTCACTCAGCAACAAGAGCAGCCATGTTGGTTAGAATCAATACTCTCCTTCAAGGCTACTCGGGTATCAGGTTTGAGATTTTGGAAGCCATAACCAAACTTCTCAACAACAACATTACTCCATGCTTGCCTCTTCGAGGAACAATTACTGCTTCTGGAGATCTTGTTCCTCTTTCGTACATCGCAGGATTACTCACTGGTCGACCAAACTCCAAAGCTGTCGGACCAAATGGAGAAAGTCTTGATGCAAAGATGGCTTTCAAACAAGCTGGTATTTCTTCTGGATTCTTTGAGTTGCAGCCTAAAGAAGGGTTGGCTCTTGTAAATGGAACTGCGGTTGGTTCTGGATTAGCCTCTATTGTTCTCTTTGAGGCCAATGTTTTGGTCGTTTTAGCCGAGATCTTATCTGCTATCTTTGCTGAGGTTATGCAAGGTAAGCCTGAATTTACTGATCATTTGACCCATAAGTTGAAGCACCATCCTGGTCAGATTGAAGCAGCTGCAATTATGGAACACATTTTGGATGGGAGCTCTTACATGAAAACTGCTAAGAAATTGCATGAAATTGATCCGCTTCAAAAGCCAAAACAAGATCGTTATGCCCTTAGAACTTCACCTCAATGGCTTGGTCCATTGATTGAGGTCATTAGATTTTCTACCAAGTCGATTGAGCGAGAGATTAATTCAGTCAATGATAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTACATGGAGGTAACTTCCAGGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTTTGGCTATAGCTTCAATTGGAAAGCTCATTTTTGCTCAATTTTCTGAGCTTGTTAATGATTTCTACAACAATGGTTTGCCTTCAAATCTTTCTGCAAGTAGAAACCCCAGTTTGGATTATGGATTCAAAGGTGCTGAAATCGCTATGGCTTCCTATTGCTCTGAGCTTCAGTATTTGGCAAATCCAGTAACAAGCCACGTCCAAAGTGCTGAGCAACATAATCAGGATGTTAACTCTCTTGGTTTAATCTCATCAAGGAAAACAGCAGAAGCCATTGACATTTTGAAACTAATGTCTTCCACATTTTTAGTTGCACTTTGTCAAGCAATTGACTTGAGGCATTTGGAAGAAAACTTGAAGAACACAGTAAAAAACACAGTAAGCCAAGTGGCCAAGAAAGTCCTTACCACCGGTGCTAATGGAGCTCTTCACCCATCAAGATTTTGTGAGAAGGATTTACTCAAAGTTGTTGACAGAGAATATACCTTTGCTTACATTGACGACCCATGCAGTGCCACTTATCCATTAATGCAGAAGTTACGACAAGTTCTAGTAGAGCACGCGCTTGGAAATGGAGAAGATGAGAAGAACACAAATAGTTCAATCTTTCAAAAGATTGGAGTTTTTGAAGAGGAACTGAAGGCTATTTTACCCAAGGAGGTAGAAAGTGCAAGGTTAGCTCATGAGAGCGGAAACTCTACTGTTCAAAATCAGATTAAGGAATGCAGATCATATCCATTGTACAAGTTTGTAAGATCAGAATTAGGAACTGAGTTGCTTACCGGAGAGAAGGTAAAATCTCCTGGAGAAGTGTGCGAGAAAGTGTTCACAGCTTTATGTCAAGGAAAGATGATCGATCCAATCTTAGAATGTTTAAAGGAGTGGAATGGTGCTCCGATCCCCATTTGCTAA 2148 45.16 MAETCEQNGHNNGGEFCLGGRNNDPLNWGVAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTIAQVAAIAARDTGVAVELSESARGGVEASSNWVMESMNKGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKMAFKQAGISSGFFELQPKEGLALVNGTAVGSGLASIVLFEANVLVVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTTGANGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALGNGEDEKNTNSSIFQKIGVFEEELKAILPKEVESARLAHESGNSTVQNQIKECRSYPLYKFVRSELGTELLTGEKVKSPGEVCEKVFTALCQGKMIDPILECLKEWNGAPIPIC 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42845941 42848821 + Lag0012633.1 Lac1g2141 595712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2141 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841(InterPro)
Lac1g2141 715 FunFam Phenylalanine ammonia-lyase 528 649 - -
Lac1g2141 715 FunFam Phenylalanine ammonia-lyase 262 567 - -
Lac1g2141 715 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Lac1g2141 715 SUPERFAMILY L-aspartase-like 24 715 IPR008948 GO:0003824(InterPro)
Lac1g2141 715 PANTHER HISTIDINE AMMONIA-LYASE 23 715 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lac1g2141 715 NCBIfam phenylalanine ammonia-lyase 24 705 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lac1g2141 715 Gene3D - 18 261 IPR024083 -
Lac1g2141 715 Gene3D - 528 649 IPR023144 -
Lac1g2141 715 CDD PAL-HAL 60 525 IPR001106 -
Lac1g2141 715 Pfam Aromatic amino acid lyase 62 541 IPR001106 -
Lac1g2141 715 FunFam Phenylalanine ammonia-lyase 18 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2141 Lac-Chr1:42845941 Lac1g2143 Lac-Chr1:42859865 0.00E+00 dispersed
Lac1g2141 Lac-Chr1:42845941 Lac1g2142 Lac-Chr1:42854717 0.00E+00 tandem
Lac3g1061 Lac-Chr3:8697552 Lac1g2141 Lac-Chr1:42845941 7.30E-239 transposed
Lac1g2141 Lac-Chr1:42845941 Lac8g2407 Lac-Chr8:42161594 0.00E+00 wgd
Lac1g2141 Lac-Chr1:42845941 Lac9g2599 Lac-Chr9:44527799 1.60E-206 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2141 K10775 - csv:101217907 1321.22