Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2142 | ATGGCACCCATCGAGCAAACCAATGACAGTTTCTGCACCATTACTACTCATCCCGACCCACTTAACTGGGGTTTGGCTGCTGAGTCCCTCAAGGGAAGCCATCTCGACGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCACTTGTCAAGCTTGGTGGTGAGACCCTCACCATTTCTCAAGTGGCTGCCATTGCTACTAGGGACTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAAGCTAGCAGCGATTGGGTTATGGAGAGCATGAATAAGGGGACCGACAGCTATGGTGTTACTACTGGGTTTGGTGCCACTTCTCATAGAAGGACCAAACAAGGTGGGGCTCTTCAAAAGGAGCTGATTAGATTTTTGAATGCTGGGATTTTCGGGAGTGGAGCTGAGTCGAGCCATACTTTGCCCCACTCGGCTACGAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGACCGAATTCTAAAGCTGTTGGACCAAGTGGAGAAAGTCTTGATGCAAAGGAGGCTTTTGAGCAAGCTGGTATTCCTTCTGGGTTCTTTGAGTTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAACGGTACTGCCGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCCAATATTTTGGCTGTTTTGTCCGAGATTTTGTCTGCCATTTTTGCTGAGGTTATGCAAGGTAAACCTGAATTTACTGACCATTTGACCCATAAGTTGAAGCACCATCCTGGTCAAATTGAGGCAGCGGCAATTATGGAACATATTTTGGATGGGAGTTCTTACATGAAGACGGCTAAGAAATTGCATGAAATTGATCCTCTTCAAAAACCGAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAGTGGCTTGGTCCATTGATTGAAGTTATTCGATTTTCAACAAAGTCTATTGAGCGAGAGATTAATTCAGTCAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCTTTACATGGAGGCAACTTCCAAGGAACTCCGATTGGAGTTTCTATGGACAACACTCGTTTGACTATTGCATCAATTGGAAAGCTCATGTTTGCTCAATTCTCAGAACTTGTCAATGATTTCTACAACAATGGTTTGCCTTCTAATCTTTCAGCTAGTAGAAATCCAAGCTTGGATTATGGGTTCAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATATCTAGCAAATCCAGTGACAAGTCATGTTCAAAGTGCTGAGCAACACAACCAGGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAGACTGCTGAAGCCATTGACATTTTGAAGCTCATGTCTTCCACCTTTTTGGTTGCTCTATGCCAAGCAATTGACTTGAGACATTTGGAAGAAAACTTGAAGAGTGTAGTGAAGAGCACAGTAAGTCAAGTGGCCAAGAAAGTTCTCACCATAGGTGCTAACGGTGCACTTCACCCATCAAGATTCTGTGAAAAAGATTTACTGAAAGTGGTTGACAGAGAATACACCTTTGCTTATGTTGATGATGCCTGCAGTGCTACTTACCCATTGATGCAAAAATTGAGACAAGTTCTTGTTGAACATGCTTTGGGAAATGGTGAAGACGAAAAGAACACAAGCACTTCAATCTTTCAAAAGATCGGAGCTTTTGAGGAGGAATTGAAAGCCATCTTGCCCAAGGAAGTAGAAAATGCCAGGTTGTCCTATGAAAATGGAACCTCAACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCACTATACAAGTTTGTGAGGGAAGAATTGGGAACTGGATTGCTTACCGGAGAGAAGGTCATATCTCCTGGAGAAGAGTGTGAAAAAGTATTCACAGCTCTTTGTCAAGGAAAGATGATCGACCCAATTCTTGAATGTTTGAAGGAGTGGAATGGTGCTCCAATTCCCATCTGCTAG | 2133 | 43.41 | MAPIEQTNDSFCTITTHPDPLNWGLAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGESLDAKEAFEQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLTIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSVVKSTVSQVAKKVLTIGANGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALGNGEDEKNTSTSIFQKIGAFEEELKAILPKEVENARLSYENGTSTIENQIKECRSYPLYKFVREELGTGLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC | 710 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 42854717 | 42856849 | + | Lag0012634.1 | Lac1g2142 | 595713 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2142 | 710 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 192 | 208 | IPR022313 | GO:0016841(InterPro) | |
Lac1g2142 | 710 | Gene3D | Fumarase/aspartase (Central domain) | 257 | 705 | - | - | |
Lac1g2142 | 710 | Pfam | Aromatic amino acid lyase | 57 | 532 | IPR001106 | - | |
Lac1g2142 | 710 | FunFam | Phenylalanine ammonia-lyase | 257 | 547 | - | - | |
Lac1g2142 | 710 | FunFam | Phenylalanine ammonia-lyase | 11 | 256 | - | - | |
Lac1g2142 | 710 | PANTHER | HISTIDINE AMMONIA-LYASE | 17 | 710 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Lac1g2142 | 710 | Gene3D | - | 11 | 256 | IPR024083 | - | |
Lac1g2142 | 710 | FunFam | Phenylalanine ammonia-lyase | 523 | 644 | - | - | |
Lac1g2142 | 710 | Gene3D | - | 523 | 644 | IPR023144 | - | |
Lac1g2142 | 710 | CDD | PAL-HAL | 55 | 520 | IPR001106 | - | |
Lac1g2142 | 710 | SUPERFAMILY | L-aspartase-like | 19 | 710 | IPR008948 | GO:0003824(InterPro) | |
Lac1g2142 | 710 | NCBIfam | phenylalanine ammonia-lyase | 19 | 700 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0290 | Lac-Chr12:3222064 | Lac1g2142 | Lac-Chr1:42854717 | 0.00E+00 | dispersed | |
Lac13g0700 | Lac-Chr13:5324893 | Lac1g2142 | Lac-Chr1:42854717 | 0.00E+00 | dispersed | |
Lac1g2142 | Lac-Chr1:42854717 | Lac7g1464 | Lac-Chr7:15344884 | 0.00E+00 | dispersed | |
Lac1g2141 | Lac-Chr1:42845941 | Lac1g2142 | Lac-Chr1:42854717 | 0.00E+00 | tandem | |
Lac1g2142 | Lac-Chr1:42854717 | Lac1g2143 | Lac-Chr1:42859865 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2142 | K10775 | - | csv:101218144 | 1359.74 |