Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2142 ATGGCACCCATCGAGCAAACCAATGACAGTTTCTGCACCATTACTACTCATCCCGACCCACTTAACTGGGGTTTGGCTGCTGAGTCCCTCAAGGGAAGCCATCTCGACGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCACTTGTCAAGCTTGGTGGTGAGACCCTCACCATTTCTCAAGTGGCTGCCATTGCTACTAGGGACTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAAGCTAGCAGCGATTGGGTTATGGAGAGCATGAATAAGGGGACCGACAGCTATGGTGTTACTACTGGGTTTGGTGCCACTTCTCATAGAAGGACCAAACAAGGTGGGGCTCTTCAAAAGGAGCTGATTAGATTTTTGAATGCTGGGATTTTCGGGAGTGGAGCTGAGTCGAGCCATACTTTGCCCCACTCGGCTACGAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGACCGAATTCTAAAGCTGTTGGACCAAGTGGAGAAAGTCTTGATGCAAAGGAGGCTTTTGAGCAAGCTGGTATTCCTTCTGGGTTCTTTGAGTTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAACGGTACTGCCGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCCAATATTTTGGCTGTTTTGTCCGAGATTTTGTCTGCCATTTTTGCTGAGGTTATGCAAGGTAAACCTGAATTTACTGACCATTTGACCCATAAGTTGAAGCACCATCCTGGTCAAATTGAGGCAGCGGCAATTATGGAACATATTTTGGATGGGAGTTCTTACATGAAGACGGCTAAGAAATTGCATGAAATTGATCCTCTTCAAAAACCGAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAGTGGCTTGGTCCATTGATTGAAGTTATTCGATTTTCAACAAAGTCTATTGAGCGAGAGATTAATTCAGTCAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCTTTACATGGAGGCAACTTCCAAGGAACTCCGATTGGAGTTTCTATGGACAACACTCGTTTGACTATTGCATCAATTGGAAAGCTCATGTTTGCTCAATTCTCAGAACTTGTCAATGATTTCTACAACAATGGTTTGCCTTCTAATCTTTCAGCTAGTAGAAATCCAAGCTTGGATTATGGGTTCAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATATCTAGCAAATCCAGTGACAAGTCATGTTCAAAGTGCTGAGCAACACAACCAGGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAGACTGCTGAAGCCATTGACATTTTGAAGCTCATGTCTTCCACCTTTTTGGTTGCTCTATGCCAAGCAATTGACTTGAGACATTTGGAAGAAAACTTGAAGAGTGTAGTGAAGAGCACAGTAAGTCAAGTGGCCAAGAAAGTTCTCACCATAGGTGCTAACGGTGCACTTCACCCATCAAGATTCTGTGAAAAAGATTTACTGAAAGTGGTTGACAGAGAATACACCTTTGCTTATGTTGATGATGCCTGCAGTGCTACTTACCCATTGATGCAAAAATTGAGACAAGTTCTTGTTGAACATGCTTTGGGAAATGGTGAAGACGAAAAGAACACAAGCACTTCAATCTTTCAAAAGATCGGAGCTTTTGAGGAGGAATTGAAAGCCATCTTGCCCAAGGAAGTAGAAAATGCCAGGTTGTCCTATGAAAATGGAACCTCAACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCACTATACAAGTTTGTGAGGGAAGAATTGGGAACTGGATTGCTTACCGGAGAGAAGGTCATATCTCCTGGAGAAGAGTGTGAAAAAGTATTCACAGCTCTTTGTCAAGGAAAGATGATCGACCCAATTCTTGAATGTTTGAAGGAGTGGAATGGTGCTCCAATTCCCATCTGCTAG 2133 43.41 MAPIEQTNDSFCTITTHPDPLNWGLAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGESLDAKEAFEQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLTIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSVVKSTVSQVAKKVLTIGANGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALGNGEDEKNTSTSIFQKIGAFEEELKAILPKEVENARLSYENGTSTIENQIKECRSYPLYKFVREELGTGLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42854717 42856849 + Lag0012634.1 Lac1g2142 595713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2142 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841(InterPro)
Lac1g2142 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Lac1g2142 710 Pfam Aromatic amino acid lyase 57 532 IPR001106 -
Lac1g2142 710 FunFam Phenylalanine ammonia-lyase 257 547 - -
Lac1g2142 710 FunFam Phenylalanine ammonia-lyase 11 256 - -
Lac1g2142 710 PANTHER HISTIDINE AMMONIA-LYASE 17 710 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lac1g2142 710 Gene3D - 11 256 IPR024083 -
Lac1g2142 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
Lac1g2142 710 Gene3D - 523 644 IPR023144 -
Lac1g2142 710 CDD PAL-HAL 55 520 IPR001106 -
Lac1g2142 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824(InterPro)
Lac1g2142 710 NCBIfam phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0290 Lac-Chr12:3222064 Lac1g2142 Lac-Chr1:42854717 0.00E+00 dispersed
Lac13g0700 Lac-Chr13:5324893 Lac1g2142 Lac-Chr1:42854717 0.00E+00 dispersed
Lac1g2142 Lac-Chr1:42854717 Lac7g1464 Lac-Chr7:15344884 0.00E+00 dispersed
Lac1g2141 Lac-Chr1:42845941 Lac1g2142 Lac-Chr1:42854717 0.00E+00 tandem
Lac1g2142 Lac-Chr1:42854717 Lac1g2143 Lac-Chr1:42859865 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2142 K10775 - csv:101218144 1359.74