Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2143 ATGGCAGCTATTCAAAAGATTGAAGACAGCTTGTGCCATAGTCGTAACGATCCGCTCAATTGGGGGGTGGCTGCCGAGTCCCTCAAGGGAAGCCATCTTGATGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCTCTTGTGAAGCTTGGAGGCGAGACTCTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGTGATTCTGATGTCTTGGTGGAGCTCTCTGAGTCTGCTAGAGCTGGTGTGAAAGCTAGCAGTGATTGGGTTATGGAGAGCATGAACAAGGGGACTGACAGTTATGGTGTCACTACTGGGTTTGGTGCTACATCTCACAGAAGAACCAAACAAGGTGGAGCTCTTCAAAAGGAGTTGATTAGATTCTTGAACGCTGGAATTTTTGGAAGTGGGGCGGAGTCGAGCCATACTTTGCCCCACTCAACTACAAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCAGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCGGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGACCAAACTCTAAAGCTGTTGGACCAAATGGAGAAAGTATTGATGCAAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTTTTTGAATTGCAACCTAAGGAAGGCCTTGCTCTTGTTAATGGTACTGCTGTTGGTTCTGGGTTGGCTTCCATTGTTCTCTTCGAAGCCAATATTTTAGCTGTCTTGTCAGAAATTCTTTCAGCCATTTTTGCAGAAGTCATGCAAGGAAAACCTGAATTTACCGATCATTTAACTCATAAGTTGAAGCACCATCCTGGTCAGATTGAAGCTGCTGCTATTATGGAACACATCTTAGATGGAAGTTCTTACATGAAGACTGCTAAAAAGTTGCATGAAATCGATCCTCTCCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAGGTGATTCGATTCTCGACAAAGTCCATTGAGCGAGAGATTAATTCAGTCAATGACAACCCTTTAATTGATGTTTCAAGAAACAAAGCTTTGCATGGAGGCAACTTCCAAGGAACTCCGATTGGAGTCTCTATGGACAACACTCGTTTAGCTGTTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTTTCAGAGCTTGTCAATGATTTTTACAACAATGGATTGCCTTCAAATCTCTCTGCAAGTAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCAAATCCTGTAACTAGTCATGTCCAAAGTGCCGAGCAACATAACCAAGATGTCAACTCCCTTGGTTTGATCTCCTCAAGAAAAACAGCTGAGGCAATTGACATTTTGAAGCTCATGTCTTCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACTTGGAAGAGAACTTGAAGAACACAGTTAAAAATACAGTGAGCCAAGTAGCGAAAAAAGTCCTCACTACTACCTCTAATGGTGCACTCCATCCTTCAAGATTTTGCGAGAAAGATTTACTCAAAGTGGTTGACAGAGAATACACTTTCGCTTACATCGACGATCCGTGCAGTGGTACTTATCCATTGATGCAGAAGTTGAGACAAGTTCTGGTGGAGCATGCTTTGAGTAATGGAGAGGATGAAAAGGACATGACCACTTCAATCTTTCAGAAGATTTGGGCCTTTGAAGAGGAATTGAAGGCCATTTTGCCCAAGGAAGTGGAAAGTGTGAGATTGGCATATGAAAACGGGGATGCAACAATTAAGAACCAAATTAAGGAATGTCGATCTTACCCATTATATAAGTTCGTGAGAGAAGAGTTGGGAACTAAATTGCTAACTGGGGAGAAGGTTATATCTCCAGGAGAAGAGTGTGAAAAGGTTTTCACTGCATTGTGTCAAGGAAAGATGATTGACCCAATTTTGGAATGCTTGAAGGAGTGGAACGGTGCTCCAATTCCCATTTGTTGA 2127 43.39 MAAIQKIEDSLCHSRNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVLVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESSHTLPHSTTRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESIDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTTTSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSGTYPLMQKLRQVLVEHALSNGEDEKDMTTSIFQKIWAFEEELKAILPKEVESVRLAYENGDATIKNQIKECRSYPLYKFVREELGTKLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42859865 42861991 + Lag0012635.1 Lac1g2143 595714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2143 708 FunFam Phenylalanine ammonia-lyase 8 254 - -
Lac1g2143 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Lac1g2143 708 Gene3D - 521 642 IPR023144 -
Lac1g2143 708 CDD PAL-HAL 53 518 IPR001106 -
Lac1g2143 708 Pfam Aromatic amino acid lyase 55 534 IPR001106 -
Lac1g2143 708 PANTHER HISTIDINE AMMONIA-LYASE 14 708 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lac1g2143 708 NCBIfam phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lac1g2143 708 FunFam Phenylalanine ammonia-lyase 255 561 - -
Lac1g2143 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841(InterPro)
Lac1g2143 708 FunFam Phenylalanine ammonia-lyase 521 642 - -
Lac1g2143 708 Gene3D - 9 254 IPR024083 -
Lac1g2143 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2141 Lac-Chr1:42845941 Lac1g2143 Lac-Chr1:42859865 0.00E+00 dispersed
Lac1g2143 Lac-Chr1:42859865 Lac7g1464 Lac-Chr7:15344884 0.00E+00 dispersed
Lac1g2142 Lac-Chr1:42854717 Lac1g2143 Lac-Chr1:42859865 0.00E+00 tandem
Lac1g2143 Lac-Chr1:42859865 Lac1g2144 Lac-Chr1:42867140 1.10E-258 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2143 K10775 - csv:101218382 1336.24