Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2144 ATGTTGGTGAGAATTAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACATCACTCCGTGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTATATAGCGGATTGCTCACTGGCCGACCAAACTCTAAGGCCACGGACCGAATGGAGAAACAAATATTTTAGCAGTTCTGTCGAAGTTCTTTCTGCCATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTCACCGATCATTTGACTCATAAGTTGAAGCACCACCCTGGTCAGATTGAAGCAGCAGCAATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAACAGCCAAGAAATTGCATGAAATTGATCCTCTCCAAAAGCCCAAACAAGATCGCTATGCTCTCAGGACTTCACCCCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCCACCAAGTCTATCGAGCGAGAGATTAATTCAGTCAACGACAACCCATTGATTGATGTTTCAAGAAACAAAGCACTGCATGGAGGCAACTTCCAAGGAACACCAATTGGAGTTTCTATGGACAACACTCGGTTGGCAATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAACGATTTCTACAACAATGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAATCCAAGCTTGGATTATGGGTTTAAAGGTGCCGAAATTGCCATGGCTTCATACTGCTCCGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCATGTCCAAAGTGCCGAGCAACACAATCAAGATGTTAACTCGCTTGGTTTAATTTCTTCAAGGAAAACAGCCGAAGCCATCGATATTCTGAAACTCATGTCATCTACATTTTTGGTTGCACTCTGCCAAGCAATCGACTTGAGACATTTGGAGGAAAACTTGAAGAGCACTGTGAAAAGCACAGTTAGCCAAATAGCCAAGAAAGTGTTGACCACATCCTCCAATGGTTCACTTCACCCATCAAGATTTTGCGAGAAAGATCTAATTAAAGTTGTTGACAGAGAGTACACATTTGCTTATATCGATGATCCATGCAGTGCTACTTACCCATTGAGTCAAAAGTTGAGGCAAGTTCTTGTTGAACATGCACTTTCCAACGGTGAAGGTGAAAAGAACACAGAGACCTCAATCTTCCAAAAGATTATTGCTTTCGAGGAGGAACTACAAGCAGTATTACCAAAGGAGGTTGAAAATGCAAGATTGTCATATGAGAGTGGAAATTCTAAAATTGAAAATCAGATCAAGGATTGCAGATCTTATCCATTGTATAGATTTGTGAGAGAAGAGTTGGGAACAAAATTGCTGACAGGAGAAAAAGTGATATCTCCAGGAGAAGAGTGCGAGAAGGTGTTCACAGCTTTGTGTCAAGGCAAGATGATTGACTCCATCTTAGAGTGCTTGAAGGAATGGAATGGTGCTCCAAATCCTATCTGCTAA 1536 41.6 MLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIADCSLADQTLRPRTEWRNKYFSSSVEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQIAKKVLTTSSNGSLHPSRFCEKDLIKVVDREYTFAYIDDPCSATYPLSQKLRQVLVEHALSNGEGEKNTETSIFQKIIAFEEELQAVLPKEVENARLSYESGNSKIENQIKDCRSYPLYRFVREELGTKLLTGEKVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPNPIC 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42867140 42868809 - Lag0012636.1 Lac1g2144 595715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2144 511 Gene3D Fumarase/aspartase (Central domain) 77 506 - -
Lac1g2144 511 Pfam Aromatic amino acid lyase 76 334 IPR001106 -
Lac1g2144 511 Pfam Aromatic amino acid lyase 1 56 IPR001106 -
Lac1g2144 511 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 39 54 IPR022313 GO:0016841(InterPro)
Lac1g2144 511 CDD PAL-HAL 1 321 IPR001106 -
Lac1g2144 511 SUPERFAMILY L-aspartase-like 1 511 IPR008948 GO:0003824(InterPro)
Lac1g2144 511 Gene3D - 324 445 IPR023144 -
Lac1g2144 511 NCBIfam phenylalanine ammonia-lyase 79 501 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lac1g2144 511 PANTHER HISTIDINE AMMONIA-LYASE 77 511 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lac1g2144 511 FunFam Phenylalanine ammonia-lyase 324 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2144 Lac-Chr1:42867140 Lac1g2146 Lac-Chr1:42874633 4.10E-260 dispersed
Lac1g2143 Lac-Chr1:42859865 Lac1g2144 Lac-Chr1:42867140 1.10E-258 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2144 K10775 - csv:101222092 893.264