Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2145 | ATGGCACCTGCTCACTTCCAACAACTTGCCTCCCAGAATGGTTCCATTGACAGCTTCTGCATCAGCCAAAATGATCCACTCAACTGGGGTGTGGCCGCTGAGTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCACTCGTCAAGCTTGGAGGTGAGACCCTCACCATTTCCCAGGTGGCTGCCATTGCTACCAGAGACTCTAATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAAGCTAGTAGCGATTGGGTTATGGAGAGCATGAACAAAGGCACCGATAGCTACGGTGTTACTACTGGATTTGGTGCTACATCCCATAGAAGGACCAAACAAGGTGGGCTCTTCAAAAGGAGCTCATTCGATTCTTGA | 408 | 50.98 | MAPAHFQQLASQNGSIDSFCISQNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSNVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGLFKRSSFDS | 135 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 42868874 | 42869281 | - | Lag0012637.1 | Lac1g2145 | 595716 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2145 | 135 | Gene3D | - | 16 | 135 | IPR024083 | - | |
| Lac1g2145 | 135 | Pfam | Aromatic amino acid lyase | 63 | 124 | IPR001106 | - | |
| Lac1g2145 | 135 | SUPERFAMILY | L-aspartase-like | 25 | 128 | IPR008948 | GO:0003824(InterPro) | |
| Lac1g2145 | 135 | PANTHER | HISTIDINE AMMONIA-LYASE | 22 | 129 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
| Lac1g2145 | 135 | MobiDBLite | consensus disorder prediction | 111 | 135 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g2145 | Lac-Chr1:42868874 | Lac7g1463 | Lac-Chr7:15331944 | 5.20E-53 | dispersed | |
| Lac1g2145 | Lac-Chr1:42868874 | Lac1g2146 | Lac-Chr1:42874633 | 2.40E-18 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g2145 | K10775 | - | csv:101218617 | 222.631 |