Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2146 ATGGTGGAGGAGTATAGAAGGCCTGTGGTGAAGTTGGGAGGTGAGACTCTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGAGATAACGATGTGATGGTGGAATTGGCTGAGTCTGCTAGAGCCGGTGTTAAAGCTAGTAGTGATTGGAAGAACCAAACAAGGTGGAGCTCTTCAGAAGGAGTTGATTCGATTCTTGAATGCTGGGTTTTTGGAAATGGGGCTGAGTCGAATCACACTCTGCCTCATTCGGCGACGAGGGCTGCCATGTTGGTGAGGATCAATACTCTGCTCCAAGGCTATTCGGGTATTAGATTTGAGATTTTGGAAGCTATTAATAATCTTCTCAATCACAACATTACTCCGTGTTTGCCACTGCGTGGAACAATTACGGCATCTGGGGACCTTGTCCCTCTGTCGTATATTGCTGGACTACTTACGGGTCGTCATAATTCAAAGGCAATTGGGCCCAATGGTGAAACTCTTGATGCAGAAGCTGCTTTTAAGCAAGCCGGTATTCCTTCTGGTTTCTTTGAGTTGCAACCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGCTTGGCTTCTATTGTTCTCTTTGAAGCAAATATTTTAGCTGTTTTGTCGGAGATTCTTTCTGCCATTTTTGCTGAGGTCATGCAAGGAAAACCTGAGTTCACTGATCATTTGACTCATAAGTTGAAGCATCACCCTGGTCAAATTGAAGCAGCAGCAATTATGGAGCACATTTTGGAAGGAAGCTCTTACATGAAAGCAGCTAAGAAATTGCATGAAATTGATCCACTCCAAAAGCCAAAACAAGATCGTTATGCTCTTCGAACTTCACCTCAATGGCTTGGTCCTTTGATTGAAGTGATTCGATTCTCCACAAAGTCTATTGAGCGAGAGATTAATTCAGTCAACGACAACCCATTGATTGATGTTTCAAGAAACAAAGCACTACACGGAGGCAACTTCCAAGGAACACCAATTGGAGTTTCTATGGACAACACTCGATTGGCAATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAACGATTTCTACAACAATGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAATCCAAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAAATCCTGTGACAAGTCATGTCCAGAGTGCTGAGCAACACAATCAAGATGTTAATTCTCTTGGTTTAATTTCTTCAAGAAAAACAGCTGAAGCCATTGACATTTTGAAACTCATGTCGTCCACATTTTTGGTTGCATTATGTCAAGCAATTGACTTGAGGCACTTGGAAGAAAACTTGAAGAGCACAGTTAGAAGCATTGTAAGCCAAGTAGCCAAGAAAGTTTTGACCACATCATCCAATGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCAAAGTTGTTGATAGAGAATATACATTTGCCTACATTGACGATCCATGCAGTGCTACTTACCCATTGATGCAGAAATTGAGACAAGTTCTTGTTGAACATGCACTCACCAATGACGAAAATGAAAAGAACACAAACACTTCCATCTTCCAGAAGATTAGTGCTTTTGAAGAGGAATTAAAATCAAATTTACCAAAGGAAGTTGAAAATGCAAGGTTGGCATATGAGAGCGGAAATTCTAAGATTGAAAATCAGATTAAGGATTGCAGATCGTATCCATTATATAGATTTGTGAGAGAAGAGTTGGGAACAAAATTGTTGACGGGAGAAAGGGTGATATCTCCAGGAGAAGAGTGCGAGAAGGTATTCACAGCTTTATGTCAAGGAAAGATGATTGACTCTATCCTAGAGTGCTTGAACGAATGGAATGGTGCTCCAATTCCCATTTGTTAA 1941 41.47 MVEEYRRPVVKLGGETLTISQVAAIATRDNDVMVELAESARAGVKASSDWKNQTRWSSSEGVDSILECWVFGNGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAINNLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAEAAFKQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVRSIVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNDENEKNTNTSIFQKISAFEEELKSNLPKEVENARLAYESGNSKIENQIKDCRSYPLYRFVREELGTKLLTGERVISPGEECEKVFTALCQGKMIDSILECLNEWNGAPIPIC 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42874633 42876643 - Lag0012638.1 Lac1g2146 595717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2146 646 PANTHER HISTIDINE AMMONIA-LYASE 1 51 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lac1g2146 646 Gene3D - 459 580 IPR023144 -
Lac1g2146 646 FunFam Phenylalanine ammonia-lyase 459 580 - -
Lac1g2146 646 SUPERFAMILY L-aspartase-like 2 646 IPR008948 GO:0003824(InterPro)
Lac1g2146 646 Pfam Aromatic amino acid lyase 78 472 IPR001106 -
Lac1g2146 646 CDD PAL-HAL 15 456 IPR001106 -
Lac1g2146 646 Gene3D Fumarase/aspartase (Central domain) 193 641 - -
Lac1g2146 646 Gene3D - 62 192 IPR024083 -
Lac1g2146 646 FunFam Phenylalanine ammonia-lyase 193 502 - -
Lac1g2146 646 NCBIfam phenylalanine ammonia-lyase 66 636 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lac1g2146 646 Gene3D - 1 61 IPR024083 -
Lac1g2146 646 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 128 144 IPR022313 GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2144 Lac-Chr1:42867140 Lac1g2146 Lac-Chr1:42874633 4.10E-260 dispersed
Lac1g2146 Lac-Chr1:42874633 Lac7g1464 Lac-Chr7:15344884 0.00E+00 dispersed
Lac1g2146 Lac-Chr1:42874633 Lac1g2148 Lac-Chr1:42878883 0.00E+00 proximal
Lac1g2145 Lac-Chr1:42868874 Lac1g2146 Lac-Chr1:42874633 2.40E-18 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2146 K10775 - csv:101222092 1173.69