Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2148 ATGGCCCAAGTTGAGACCATCTGTAAGAGCTCTACTCATGACCCACTCAATTGGAGTGTGGCAGCTGAGTCCCTCAAGGGAAGCCATCTTGATGAGGTGAAACGTATGGTGGAGGAGTACAAGAGGCCCCATGTCAAGCTTAGTGGTGAGACCCTCACCATTTCTCAAGTGGCTGCCATTGCTAATCGAAACTCTGATGTTACTATTGAACTTTGTGAGTCTACTAGGGCTGGTGTGAAAGCTAGTAGTGATTGGATTATGGATAGTTTGAACAAAGGCACTGATAGCTATGGTGTTACTACCGGATTCGGTGCTACATCCCATAGAAGAACCAACCAAGGTGGGGCTCTTCAAAAGGAGTTAGTTCGATTCTTAAATGCTGGGATCTTTGGGAGTGGAGCTGAGTCGAGCCATACTTTGCCTCACTCGGCTACAAGGGCGGCCATGTTGGTGAGAATTAATACTCTTCTTCAAGGCTACTCGGGTGTTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTATATTGCTGGATTGCTCATTGGCCGACCAAACTCTAAAGCTATTGGTCCAAATGGAGAATGTCTAGATGCAAAGGAGGCTTTCCAACAAGCCCATATTCCTTATGGGTTCTTTGAGTTTCAACCTAAGGAAGGTTTTGCTCTTGTCAACAGTACTGCTGTCGGTTCTGGGTTGGCTTCTATTGTTCTCTTTGAAGCAAATATTTTGGTTGTTTTGTCAGAAATTCTTTCGGCCATTTTTGCTGAGGTCATGCAAGGGAAGCCTGAATTCACTGATCATTTGACTCATAAGTTGAAGCACCATCCAGGTCAAATTGAGGCGGCTGCAATCATGGAATACATTTTAGATGGAAGTTCTTACATGAAAACTGCTACGAAATTGCATGAAATTGATCCTCTTCAAAAGCCCAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAGGTTATTCGATTCTCAACAAAGTCTATTGAGCGGGAGATTAATTCTGTCAACGACAACCCTTTGATTGATGTTTCAAGAAATAAGACTTTGCATGGAGGAAACTTCCAAGGAACTCCGGTCGGAGTCTCCATGGATAACACTCGTTTGGCTATTGCTTCAATTGGGAAGCTTATGTTTGCTCAGTTCTCAGAACTTGTCAATGATTTCTACAATAATGGTTTACCTTCTAATCTTTCTGCAAGTAGAAATCCAAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAACTTCAATATCTTGCCAATCCAGTGACAAGTCATGTTCAGAGTGCTGAGCAACATAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTTTGAAACTCATGTCTTCAACATTTTTAGTGGCTCTTTGCCAAGCAATTGACTTGAGACATTTAGAGGAAAATTTGAAGAGCACAGTTAAAAGCACGGTAGGCCAAGTAGCAAAGAAAGTGTTGTCCACATCATCTAATGGTTCACTTTACTCGTCACGATTTTGCGAAAATGACTTATTGAAAGTTGTTGACGGAGAGTATACTTTTGCTTACATAGATGACCCATGCAGTGCCACGTACCCGTTAATGCAGAAGTTGAGGCAAGTTCTCGTTGAGCATGCCATCACAAACAATGATGATGAAAAGAACACAAACACTTTAGTCTTCCAAAAGATTGTTGCTTTCGAGGAGGAATTGAAGGCAATTTTACCAAAGGAAGTTGAAAGTACAAGGTTGACATACGAGGGTGGAAATGCACAAATTAAGAACCAAATTGAAGAATGCAGATCTTACCCATTATATAAATTTGTGAGAGAAGAGTTAGGAACAAAATTGATCACAGGTGAGAAAGTGATATCTCCAGGAGAAGCGTGTGAAAAAGTATTTATGGCCTTGTGTCAAGGAAAGATGATCGATTCTATCTTAGAATGTTTGAAGGAGTGGAATGGTGCTCCAATTCCCATATGTTAG 2118 41.36 MAQVETICKSSTHDPLNWSVAAESLKGSHLDEVKRMVEEYKRPHVKLSGETLTISQVAAIANRNSDVTIELCESTRAGVKASSDWIMDSLNKGTDSYGVTTGFGATSHRRTNQGGALQKELVRFLNAGIFGSGAESSHTLPHSATRAAMLVRINTLLQGYSGVRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAIGPNGECLDAKEAFQQAHIPYGFFEFQPKEGFALVNSTAVGSGLASIVLFEANILVVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEYILDGSSYMKTATKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKTLHGGNFQGTPVGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVGQVAKKVLSTSSNGSLYSSRFCENDLLKVVDGEYTFAYIDDPCSATYPLMQKLRQVLVEHAITNNDDEKNTNTLVFQKIVAFEEELKAILPKEVESTRLTYEGGNAQIKNQIEECRSYPLYKFVREELGTKLITGEKVISPGEACEKVFMALCQGKMIDSILECLKEWNGAPIPIC 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42878883 42881000 - Lag0012640.1 Lac1g2148 595719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2148 705 Gene3D - 518 639 IPR023144 -
Lac1g2148 705 FunFam Phenylalanine ammonia-lyase 252 540 - -
Lac1g2148 705 NCBIfam phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lac1g2148 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841(InterPro)
Lac1g2148 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
Lac1g2148 705 FunFam Phenylalanine ammonia-lyase 518 639 - -
Lac1g2148 705 PANTHER HISTIDINE AMMONIA-LYASE 9 705 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lac1g2148 705 CDD PAL-HAL 50 515 IPR001106 -
Lac1g2148 705 Gene3D - 5 251 IPR024083 -
Lac1g2148 705 FunFam Phenylalanine ammonia-lyase 5 251 - -
Lac1g2148 705 SUPERFAMILY L-aspartase-like 14 705 IPR008948 GO:0003824(InterPro)
Lac1g2148 705 Pfam Aromatic amino acid lyase 52 524 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2148 Lac-Chr1:42878883 Lac7g1464 Lac-Chr7:15344884 0.00E+00 dispersed
Lac1g2146 Lac-Chr1:42874633 Lac1g2148 Lac-Chr1:42878883 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2148 K10775 - csv:101218856 1248.03