Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2148 | ATGGCCCAAGTTGAGACCATCTGTAAGAGCTCTACTCATGACCCACTCAATTGGAGTGTGGCAGCTGAGTCCCTCAAGGGAAGCCATCTTGATGAGGTGAAACGTATGGTGGAGGAGTACAAGAGGCCCCATGTCAAGCTTAGTGGTGAGACCCTCACCATTTCTCAAGTGGCTGCCATTGCTAATCGAAACTCTGATGTTACTATTGAACTTTGTGAGTCTACTAGGGCTGGTGTGAAAGCTAGTAGTGATTGGATTATGGATAGTTTGAACAAAGGCACTGATAGCTATGGTGTTACTACCGGATTCGGTGCTACATCCCATAGAAGAACCAACCAAGGTGGGGCTCTTCAAAAGGAGTTAGTTCGATTCTTAAATGCTGGGATCTTTGGGAGTGGAGCTGAGTCGAGCCATACTTTGCCTCACTCGGCTACAAGGGCGGCCATGTTGGTGAGAATTAATACTCTTCTTCAAGGCTACTCGGGTGTTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTATATTGCTGGATTGCTCATTGGCCGACCAAACTCTAAAGCTATTGGTCCAAATGGAGAATGTCTAGATGCAAAGGAGGCTTTCCAACAAGCCCATATTCCTTATGGGTTCTTTGAGTTTCAACCTAAGGAAGGTTTTGCTCTTGTCAACAGTACTGCTGTCGGTTCTGGGTTGGCTTCTATTGTTCTCTTTGAAGCAAATATTTTGGTTGTTTTGTCAGAAATTCTTTCGGCCATTTTTGCTGAGGTCATGCAAGGGAAGCCTGAATTCACTGATCATTTGACTCATAAGTTGAAGCACCATCCAGGTCAAATTGAGGCGGCTGCAATCATGGAATACATTTTAGATGGAAGTTCTTACATGAAAACTGCTACGAAATTGCATGAAATTGATCCTCTTCAAAAGCCCAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAGGTTATTCGATTCTCAACAAAGTCTATTGAGCGGGAGATTAATTCTGTCAACGACAACCCTTTGATTGATGTTTCAAGAAATAAGACTTTGCATGGAGGAAACTTCCAAGGAACTCCGGTCGGAGTCTCCATGGATAACACTCGTTTGGCTATTGCTTCAATTGGGAAGCTTATGTTTGCTCAGTTCTCAGAACTTGTCAATGATTTCTACAATAATGGTTTACCTTCTAATCTTTCTGCAAGTAGAAATCCAAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAACTTCAATATCTTGCCAATCCAGTGACAAGTCATGTTCAGAGTGCTGAGCAACATAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTTTGAAACTCATGTCTTCAACATTTTTAGTGGCTCTTTGCCAAGCAATTGACTTGAGACATTTAGAGGAAAATTTGAAGAGCACAGTTAAAAGCACGGTAGGCCAAGTAGCAAAGAAAGTGTTGTCCACATCATCTAATGGTTCACTTTACTCGTCACGATTTTGCGAAAATGACTTATTGAAAGTTGTTGACGGAGAGTATACTTTTGCTTACATAGATGACCCATGCAGTGCCACGTACCCGTTAATGCAGAAGTTGAGGCAAGTTCTCGTTGAGCATGCCATCACAAACAATGATGATGAAAAGAACACAAACACTTTAGTCTTCCAAAAGATTGTTGCTTTCGAGGAGGAATTGAAGGCAATTTTACCAAAGGAAGTTGAAAGTACAAGGTTGACATACGAGGGTGGAAATGCACAAATTAAGAACCAAATTGAAGAATGCAGATCTTACCCATTATATAAATTTGTGAGAGAAGAGTTAGGAACAAAATTGATCACAGGTGAGAAAGTGATATCTCCAGGAGAAGCGTGTGAAAAAGTATTTATGGCCTTGTGTCAAGGAAAGATGATCGATTCTATCTTAGAATGTTTGAAGGAGTGGAATGGTGCTCCAATTCCCATATGTTAG | 2118 | 41.36 | MAQVETICKSSTHDPLNWSVAAESLKGSHLDEVKRMVEEYKRPHVKLSGETLTISQVAAIANRNSDVTIELCESTRAGVKASSDWIMDSLNKGTDSYGVTTGFGATSHRRTNQGGALQKELVRFLNAGIFGSGAESSHTLPHSATRAAMLVRINTLLQGYSGVRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAIGPNGECLDAKEAFQQAHIPYGFFEFQPKEGFALVNSTAVGSGLASIVLFEANILVVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEYILDGSSYMKTATKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKTLHGGNFQGTPVGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVGQVAKKVLSTSSNGSLYSSRFCENDLLKVVDGEYTFAYIDDPCSATYPLMQKLRQVLVEHAITNNDDEKNTNTLVFQKIVAFEEELKAILPKEVESTRLTYEGGNAQIKNQIEECRSYPLYKFVREELGTKLITGEKVISPGEACEKVFMALCQGKMIDSILECLKEWNGAPIPIC | 705 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 42878883 | 42881000 | - | Lag0012640.1 | Lac1g2148 | 595719 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2148 | 705 | Gene3D | - | 518 | 639 | IPR023144 | - | |
Lac1g2148 | 705 | FunFam | Phenylalanine ammonia-lyase | 252 | 540 | - | - | |
Lac1g2148 | 705 | NCBIfam | phenylalanine ammonia-lyase | 14 | 695 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Lac1g2148 | 705 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 187 | 203 | IPR022313 | GO:0016841(InterPro) | |
Lac1g2148 | 705 | Gene3D | Fumarase/aspartase (Central domain) | 252 | 700 | - | - | |
Lac1g2148 | 705 | FunFam | Phenylalanine ammonia-lyase | 518 | 639 | - | - | |
Lac1g2148 | 705 | PANTHER | HISTIDINE AMMONIA-LYASE | 9 | 705 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Lac1g2148 | 705 | CDD | PAL-HAL | 50 | 515 | IPR001106 | - | |
Lac1g2148 | 705 | Gene3D | - | 5 | 251 | IPR024083 | - | |
Lac1g2148 | 705 | FunFam | Phenylalanine ammonia-lyase | 5 | 251 | - | - | |
Lac1g2148 | 705 | SUPERFAMILY | L-aspartase-like | 14 | 705 | IPR008948 | GO:0003824(InterPro) | |
Lac1g2148 | 705 | Pfam | Aromatic amino acid lyase | 52 | 524 | IPR001106 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2148 | Lac-Chr1:42878883 | Lac7g1464 | Lac-Chr7:15344884 | 0.00E+00 | dispersed | |
Lac1g2146 | Lac-Chr1:42874633 | Lac1g2148 | Lac-Chr1:42878883 | 0.00E+00 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2148 | K10775 | - | csv:101218856 | 1248.03 |