Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2180 ATGACCATGCCATCATTGCCATTATTGCGAGGCCTGTGGGCGTCTCTGCTGATCGTGTCGTTGCTCATTGGCTATGGAAATGCAGCAGCAGCCTCGTTGGGACGTCGGCGTTATGCAATGCGTAGGCAATTAAGCGCGCAGTTTATTAGAAAGCCTCACAGGCCGTCGTTTAAGCCCGGCCCTTGGAAGCACGCTCATGCTACCTTCTATGAAGGTGGCTCCAACACGTTCGGAGGAGCATGTGGGTACGACGACGTAGAAAAAGAAGGGTATGGGATGCAGACGGCGGCGCTGAGCATGGCGCTGTTCAACAACGGCCAGAGCTGCGGCGCTTGCTTCGAAATCAAATGCGTCGACGATCCTCAGATGTGCAAGCCCGGTCAGCCCTCCCTCATGGTTACGGGCACCAACCACTGCCCGCCCAACTACAACCTCGCCAGCGACAATGGCGGATGGTGCAATCCCCCGCTCGAGCATTTCGACATAGCCAAGCCTGTTTTCCTCAACATTGCCGAGTACAAGGCTGGCATCGTTCCCATCACTTACCGCAGGGTTCCATGCCAAAAGCAAGGAGGAATTCGATTCACAATAACAGGAAATCCATACTTCAACCAAGTGTTGGTGTGGAACGTGGGAGGAGCTGGAGATTTGACGAGTGTGCTCGTGAAGGGTCACCGCAAGCTCAAATGGACGGCCATGTCTCGTTTGTGGGGTCAAAAATGGGTCACCAACGCCATGATGGCTAGCGAGGCGCTCACCTTCAGGGTTCGAGCCAGCGACGGCAGATTCTCCACTTCATGGCACGTTGCTCCACCCAATTGGCAGTTTGGTCAGACCTTCGAAGGCAAGAACTTTAAAGTCTTCAAGAAGCTTTGGTCTAGAAGGTTTGTTCTTCAGAAGGATTTGGATTCTTCTGGATGGATCGAGGTAAACTTCAGTCTTCAGGTCTGTAGGAGGTTCAGAGCTTCAGTCTTCGATTTGGATTTGAGGATGATCAGAACCTTGTTCTTCAGTTCTGTAGCTGAATCTGGCGAGGATCTGAGCTTTGATCTTCGATTCTGCAGTGGGTTTTGA 1074 52.42 MTMPSLPLLRGLWASLLIVSLLIGYGNAAAASLGRRRYAMRRQLSAQFIRKPHRPSFKPGPWKHAHATFYEGGSNTFGGACGYDDVEKEGYGMQTAALSMALFNNGQSCGACFEIKCVDDPQMCKPGQPSLMVTGTNHCPPNYNLASDNGGWCNPPLEHFDIAKPVFLNIAEYKAGIVPITYRRVPCQKQGGIRFTITGNPYFNQVLVWNVGGAGDLTSVLVKGHRKLKWTAMSRLWGQKWVTNAMMASEALTFRVRASDGRFSTSWHVAPPNWQFGQTFEGKNFKVFKKLWSRRFVLQKDLDSSGWIEVNFSLQVCRRFRASVFDLDLRMIRTLFFSSVAESGEDLSFDLRFCSGF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43229203 43233028 - Lag0012672.1 Lac1g2180 595751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2180 357 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576(InterPro)
Lac1g2180 357 PRINTS Expansin/Lol pI family signature 268 282 IPR007118 GO:0005576(InterPro)
Lac1g2180 357 PRINTS Expansin/Lol pI family signature 175 191 IPR007118 GO:0005576(InterPro)
Lac1g2180 357 PRINTS Expansin/Lol pI family signature 99 117 IPR007118 GO:0005576(InterPro)
Lac1g2180 357 PRINTS Expansin/Lol pI family signature 61 76 IPR007118 GO:0005576(InterPro)
Lac1g2180 357 PRINTS Expansin signature 90 104 IPR002963 GO:0009664(InterPro)
Lac1g2180 357 PRINTS Expansin signature 167 180 IPR002963 GO:0009664(InterPro)
Lac1g2180 357 PRINTS Expansin signature 150 167 IPR002963 GO:0009664(InterPro)
Lac1g2180 357 PRINTS Expansin signature 239 260 IPR002963 GO:0009664(InterPro)
Lac1g2180 357 PRINTS Expansin signature 268 284 IPR002963 GO:0009664(InterPro)
Lac1g2180 357 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
Lac1g2180 357 PRINTS Expansin signature 131 141 IPR002963 GO:0009664(InterPro)
Lac1g2180 357 PRINTS Expansin signature 117 128 IPR002963 GO:0009664(InterPro)
Lac1g2180 357 PRINTS Expansin signature 191 203 IPR002963 GO:0009664(InterPro)
Lac1g2180 357 Pfam Expansin C-terminal domain 193 271 IPR007117 -
Lac1g2180 357 CDD DPBB_EXPA_N 61 187 - -
Lac1g2180 357 SMART dpbb_1 95 182 IPR007112 -
Lac1g2180 357 SUPERFAMILY PHL pollen allergen 189 282 IPR036749 -
Lac1g2180 357 PANTHER EXPANSIN-A15 46 285 IPR002963 GO:0009664(InterPro)
Lac1g2180 357 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 78 192 IPR007112 -
Lac1g2180 357 Gene3D - 47 188 IPR036908 -
Lac1g2180 357 Gene3D - 191 285 IPR036749 -
Lac1g2180 357 SUPERFAMILY Barwin-like endoglucanases 61 210 IPR036908 -
Lac1g2180 357 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 202 282 IPR007117 -
Lac1g2180 357 Pfam Lytic transglycolase 95 182 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2180 Lac-Chr1:43229203 Lac9g2465 Lac-Chr9:43539314 1.10E-89 dispersed
Lac1g2180 Lac-Chr1:43229203 Lac1g2050 Lac-Chr1:42040877 6.30E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2180 - - - 0.0