Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2185 ATGCCGATCCGTAACATTGCCATTGGAAGGCCCGAAGAGGCTACTCATCCGGATGCTTTGAAGGCTGGCTTGGCTGAGTTCATTTCCACCTTGATTTTCGTTTTTGCCGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACTGACGGCGGCGCCGCCACTCCCGCCGGCCTTATCTCCGCCTCCATCGCCCATGCCTTCGCCCTTTTTGTTGCCGTCTCCGTCGGCGCCAACATCTCCGGCGGCCACGTCAACCCTGCTGTTACCTTCGGCGCCTTCGTCGGTGGCAACATCACCCTCCTCCGTGGCATCGTCTACTGGATCGCTCAGCTCCTCGGATCCGTTGTCGCCTGCTTGCTCCTTAAGTTCGTCACTGGCTTGCCCACCGGAAGCTTCGCTCTATCAGCGGGAGTTGGTGAAATAAACGCCTTCGTTTTCGAGATCGTGATGACATTCGGATTGGTGTACACGGTGTACGCGACCGCAGTGGATCCGAAGAAGGGCAGTTTGGGAACAATTGCACCGATCGCCATCGGTTTCATCGTCGGAGCAAACATTTTGGCCGGCGGAGCATTCACCGGAGCGTCGATGAACCCGGCGGTGGCATTTGGACCGTCGGTGGTGAGCTGGTCATGGGAGAGCCACTGGGTGTACTGGGCCGGGCCTCTGATCGGAGGTGGGCTTGCTGGGCTCATCTACGAGTTCGTTTTCATTTCCAACACCCACGAGCAGTTGCCAACCACCGACTACTGA 753 58.03 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTDGGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGEINAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWESHWVYWAGPLIGGGLAGLIYEFVFISNTHEQLPTTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43310071 43311460 + Lag0012677.1 Lac1g2185 595756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2185 250 FunFam Probable aquaporin TIP1-1 4 250 - -
Lac1g2185 250 CDD MIP 21 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2185 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lac1g2185 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2185 250 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lac1g2185 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2185 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2185 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2185 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2185 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2185 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g2185 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Lac1g2185 250 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0340 Lac-Chr10:2670358 Lac1g2185 Lac-Chr1:43310071 2.80E-80 dispersed
Lac10g2984 Lac-Chr10:44423477 Lac1g2185 Lac-Chr1:43310071 1.20E-103 dispersed
Lac11g2291 Lac-Chr11:38983589 Lac1g2185 Lac-Chr1:43310071 4.60E-79 dispersed
Lac1g2185 Lac-Chr1:43310071 Lac8g2480 Lac-Chr8:42714981 5.00E-94 dispersed
Lac1g2185 Lac-Chr1:43310071 Lac4g2901 Lac-Chr4:47447596 5.60E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2185 K09873 - csv:101204225 469.929