Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2192 ATGCTGGCCACAGCCTGCATTGTGCTTCTAGCTTTGTTGCTACCCTCCATCCCGCTGCACAGTGCCGCTGCCGCTCTCAATCTCACTCTCCCTGGCCAGCATCCGAGCCCGGAACTGGTTGCACAAGAAGTTCACAGGAAAGTGAATGCTTCCATAACGAGAAGGAAATTGCTCCAACTCTCAGAGAAAGACGAATCTTCTTCCTGCTACACTGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGCCAACGCCTCGCCGATTGCGCCATAGGATTCGGCCAGTACGCTCTCGGCGGCAAGAACGGCGAGTTCTACATAGTGACAGACGACTCCGATGACGATCCGGTCAATCCAAAGCCCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTCTGGATCGTCTTCCCCGCCAACATGCTCATCAAACTCTCACAGGAGCTTATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAACGTCCACATCGTCGGAGGCGGCTGCATCACCTTGCAGTACATAAGCAACGTCATCATCCACAACATCCACATCCACCATTGCTATCCATCAGGTAACACGATGGTCCGATCGAGTCCGACGCATTACGGTTACCGGACGAAATCGGACGGCGACGGGATATCGATCTTCGGGTCGAAGGACATATGGATTGACCATTGTTCGCTGTCGCATTGCAAAGATGGGCTGATTGATGCGGTGATGGGCTCCACCGGAATCACGATTTCGAACAATTATTTCTCGCATCACGATGAGGTTATGCTGCTGGGTCACAGTGACACCTACTTGCCGGACTCCGGAATGCAGGTAACAATAGCATTCAACCACTTCGGGGAGAAGCTAGTGCAAAGGATGCCGCGATGCCGACGTGGCTACATCCACGTGGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGAGGCAGCGGAAACCCCACAATCAACAGCCAAGGCAACCGCTACACCGCGCCATACGACCGCAACGCCAAGGAGGTAACCAAGCGGGTCGAGACCGCCGAGTCCGAGTGGCGCGGCTGGAACTGGCGCTCCGACGGCGACATCCTCGTCAACGGCGCCTTCTTCGTCACTTCCGGCCAAGGCCTCGAAGTCAAGTACGAGAAGGCCTACAGCGTCGAGCCCAAGTCCGCCGCGCTGATCGACCAGCTCACTTGGCACGCCGGCCCGCTTGGCGTCGGCGGTAGGGACAACAATTTGGGGATGTGGACCACTGGCCCTAATGGCGGAGGCTTTGCGATTGGCTCTGGCCCGGATTACACTGACGACATGTCGGAAAGCTGGTCGAGGTCTCGTTATTTTGTTATGGCGTTGTCGCTTTTGTTTTGTTCTTTTTGTGCATTGGCACTTGCCTTTGTTAGTTCTTGA 1434 55.3 MLATACIVLLALLLPSIPLHSAAAALNLTLPGQHPSPELVAQEVHRKVNASITRRKLLQLSEKDESSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDPVNPKPGTLRYAVIQPQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDTYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETAESEWRGWNWRSDGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGFAIGSGPDYTDDMSESWSRSRYFVMALSLLFCSFCALALAFVSS 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43364350 43367938 - Lag0012684.1 Lac1g2192 595763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2192 477 Gene3D - 72 414 IPR012334 -
Lac1g2192 477 SMART amb_all 147 344 IPR002022 -
Lac1g2192 477 PANTHER PECTATE LYASE 18-RELATED 18 415 IPR045032 GO:0030570(InterPro)
Lac1g2192 477 FunFam Pectate lyase 72 414 - -
Lac1g2192 477 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Lac1g2192 477 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Lac1g2192 477 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Lac1g2192 477 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Lac1g2192 477 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Lac1g2192 477 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Lac1g2192 477 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Lac1g2192 477 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Lac1g2192 477 Pfam Pectate lyase 157 336 IPR002022 -
Lac1g2192 477 SUPERFAMILY Pectin lyase-like 68 397 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0672 Lac-Chr13:5111088 Lac1g2192 Lac-Chr1:43364350 1.20E-182 dispersed
Lac1g2192 Lac-Chr1:43364350 Lac6g0705 Lac-Chr6:5993368 3.10E-153 dispersed
Lac1g2192 Lac-Chr1:43364350 Lac8g2372 Lac-Chr8:41832794 5.70E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2192 K01728 - csv:101203012 866.685