Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2210 | ATGTCTTCCACTCTCTGTTTTCCCTCCATCACTTTCCCCTCTACTTCCCTCCATAAGCGAATCCCTCTCAGGCGAACAACCCCACCTCCATATCTCTCCATTAAATCCTCCATTGACGAAAGGAATCCCTCTACGCCCGCCAAGCTCAACAACTCAACCAACAATGCGAAATCCGCTTCCTGGGTCAGCCCAGATTGGCTCACTTCTCTCACTCGCTACATTACCCTACGGCAGGGCGACGATTCGGGCATTCCCATAGCCAGTGCGAAGCTCGATGACGTTTCTGATCTTCTCGGCGGTGCTCTCTTCCTTCCACTCTTCAAGTGGATGAATGACTATGGACCCATTTACAGGCTCGCCGCTGGCCCTAGGAATTTCGTTGTGGTTAGTGACCCCGCCATTGCTAAGCATGTTCTCAGGAATTATGGGACTTATGCTAAGGGGCTTGTTTCTGAGGTCTCCGAGTTCTTGTTTGGGTCGGGTTTTGCGATTGCAGAAGGCCCGCTTTGGACGGTTCGCCGTAGGGCTGTGGTTCCGTCTCTTCACAAGAAGTACTTGTCAGTTATTGTTGATCGAGTATTCTGTAAATGTGCCATGAGATTGGTGGAGAAGCTGCAAAAGGATGCATTAAATAATAATTCAGTTAACATGGAGGAAAAGTTTTCTCAACTAACTCTTGATGTTATTGGTCTATCTGTATTCAACTACAGTTTTGATTCTCTCTCTACTGACAGCCCTGTGATTGATGCAGTTTACACTGCTTTGAAAGAGGCAGAGGCTCGTTCTACTGATATTTTACCATATTGGAAGATTAAGGCTCTCTGTAAGATAATCCCAAGACAGATAAAAGCTGAAGAAGCAGTTACAGTGATCAGAAGAACTGTTGAAGAACTAATTGCCAAGTGCAAAGAGATTGTGGAAACTGAGGGTGAGCGTATTGATGAGGAGGAATATGTGAATGATGCTGATCCAAGCATCCTTCGTTTTCTGCTGGCCAGTAGACAAGAGGTCTCAAGTGTACAATTACGAGACGATCTATTGTCAATGTTAGTTGCTGGACATGAAACTACTGGTTCTGTTCTGACTTGGACACTGTATCTTTTAAGTAAGGACACCTCATCATTGATCAAGGCACAAAATGAAGTTGATAGAGTCTTACAAGGAAGGCCTCCTTCCTATGAAGATACTAAGGAACTTAAATTTTTGACACGTTGTATTCTCGAGTCGATGCGCCTTTACCCACATCCACCTGTTTTGATAAGAAGAGCTCAAGTTGCTGACATACTGCCTGGAAATTTCAAGGTTAATGCTGGTCAAGATATCATGATTTCAGTATATAACATCCACCGTTCTTCCCAGGTTTGGGAACAAGCAGAAGAGTTTATACCAGAAAGATTTGACTTGGAAGGTCCTGTGCCTAATGAAAGCAACACAGATTTCAGATTTATTCCCTTCAGCGGAGGTCCCCGAAAGTGTGTTGGCGATCAATTTGCCCTGCTTGAAGCTATTGTTGCACTTGCCATATTTCTGCAGCATATGAACTTTGAGCTGGTTCCAGATCAGACCATTGGGATGACTACTGGAGCAACTATACATACAACAAGCGGTTTGTACATGAAACTCAGCCAAAGGCAGCTGACCCCAGAATTAGCTTCCCCCGCGTCTTTAAGGTAA | 1674 | 44.74 | MSSTLCFPSITFPSTSLHKRIPLRRTTPPPYLSIKSSIDERNPSTPAKLNNSTNNAKSASWVSPDWLTSLTRYITLRQGDDSGIPIASAKLDDVSDLLGGALFLPLFKWMNDYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTYAKGLVSEVSEFLFGSGFAIAEGPLWTVRRRAVVPSLHKKYLSVIVDRVFCKCAMRLVEKLQKDALNNNSVNMEEKFSQLTLDVIGLSVFNYSFDSLSTDSPVIDAVYTALKEAEARSTDILPYWKIKALCKIIPRQIKAEEAVTVIRRTVEELIAKCKEIVETEGERIDEEEYVNDADPSILRFLLASRQEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKDTSSLIKAQNEVDRVLQGRPPSYEDTKELKFLTRCILESMRLYPHPPVLIRRAQVADILPGNFKVNAGQDIMISVYNIHRSSQVWEQAEEFIPERFDLEGPVPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAIFLQHMNFELVPDQTIGMTTGATIHTTSGLYMKLSQRQLTPELASPASLR | 557 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 43514208 | 43519763 | - | Lag0012702.1 | Lac1g2210 | 595781 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2210 | 557 | Pfam | Cytochrome P450 | 106 | 527 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2210 | 557 | SUPERFAMILY | Cytochrome P450 | 99 | 544 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2210 | 557 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 485 | 494 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac1g2210 | 557 | Gene3D | Cytochrome P450 | 85 | 552 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2210 | 557 | CDD | CYP97 | 104 | 538 | - | - | |
| Lac1g2210 | 557 | MobiDBLite | consensus disorder prediction | 30 | 59 | - | - | |
| Lac1g2210 | 557 | PANTHER | CYTOCHROME P450 FAMILY 4 | 101 | 518 | IPR050196 | GO:0009507(PANTHER)|GO:0009974(PANTHER)|GO:0016117(PANTHER) | |
| Lac1g2210 | 557 | PRINTS | E-class P450 group I signature | 444 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2210 | 557 | PRINTS | E-class P450 group I signature | 110 | 129 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2210 | 557 | PRINTS | E-class P450 group I signature | 361 | 387 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2210 | 557 | PRINTS | E-class P450 group I signature | 341 | 358 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2210 | 557 | PRINTS | E-class P450 group I signature | 482 | 492 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2210 | 557 | PRINTS | E-class P450 group I signature | 492 | 515 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2210 | 557 | MobiDBLite | consensus disorder prediction | 22 | 59 | - | - | |
| Lac1g2210 | 557 | PRINTS | P450 superfamily signature | 492 | 503 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2210 | 557 | PRINTS | P450 superfamily signature | 404 | 415 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2210 | 557 | PRINTS | P450 superfamily signature | 352 | 369 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2210 | 557 | PRINTS | P450 superfamily signature | 483 | 492 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g2210 | Lac-Chr1:43514208 | Lac5g1866 | Lac-Chr5:36920308 | 7.70E-127 | dispersed | |
| Lac1g2210 | Lac-Chr1:43514208 | Lac11g0177 | Lac-Chr11:1671895 | 1.70E-33 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g2210 | K09837 | - | csv:101204961 | 1023.46 |