Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2241 ATGGAAATGCCTGGAAGGAGGTCAGATTACTCGCTTTTAAGTCAAGTTCCGGACGAGGAGGTTGGAACGGGAACTTCCACTTCGTTTTACGAGTCCTTAGCAGCTGACGGAAACATTAACAAGGGGAGAACCGATAGAGTCTATGATTGGGATGGGAGCGGTGATCACAAGATAATCACGCAAGCGAATCGGATAGGGAACATGTATTCGTGGATTGGTTTGCAGAGGCATTCTAGTGGAAGCAGCTACGATGATAGCTCTCTCTCCAGTGATTACTACGCACCTACGCTCTCAAACCCAGCAGCAAATGAGATCAATTCATTGGGATATATCCACGACGATGAATTAAGAATGAAAGCTGTGGGAAGTGGAGGTTCGTCGGGGAAGAGCTGGGCGCAGCAGACGGAAGAGAGCTATCAGTTGCAGCTGGCCTTGGCTCTCAGGCTTTCTTCAGAGGCCACATGTGCCGATGATCTCAACTTTATGGATCCGATGCCAGACGAGAGAGCGTTAAGATCGTTGTCGAGTTCAGCTGAGGCCATATCGCATCGATTTTGGGTAAATGGATGCATGTCCTATTTTGAGAAAGTTCCAGATGGCTTTTATCTAATTCATGGGATGGACCCTTATGTATGGTCTTTATGCACCAATCTACAAGAGGATGGCCGTATTCCATCATTTGAATCTCTGAAGACAGTTGACTCCAGCATTGGTTCATCGATTGAAGTAGTTTTGATAGATCAGCATAGTGATGCCAGTTTAAAGGAACTGCAAAACAGAGTGCATAATATTTCTTCTAGCTGTATAACGACAAAAGAGGTTGCAGATCATTTAGCAAAGCTGGTATGCAATCACATGGGGGGTTCAGTTTCTGAGAGAGAAGATGACTTGGTTTCCTCCTGGAGGGAATGCAGCGACGACTTAAAAGAATGTTTGGGATCTATCGTGATTCCATTATGCAGCTTATCTGTTGGCCTTTGCAGACATCGTGCTCTTTTATTCAAAGTGCTAGCTGATTCAATTGATTTGCCCTGTCGAATTGCCAAGGGCTGTAAATATTGCACTAGAGATGATGCTTCATCTTGCCTTGTTAGGTTCGGGCTTGATAGGGAATATCTCATTGATCTGATTGGGAAGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTGTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGTCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTATCTGAGAAGGATGCCACATCCTCTGCCTATCAAAGACCATTCAATAGGAAGGATGTAGATGGTAAAAACATAGTGCTTACTGGTGACAGGGATGGAAGTTCTCAGTTATTGAATCCAAAAGCTTCTCAACCAAGTGCTCAAGATGGAAAGCCTGAGCAACTTAGATTATGTGATACTTCTCAATATAGTGTACAGTCTACCCCTTTTGTAGAACATGTAGTCCCATTAAACCAGATCTCACTAATTGGTTCCAAAGATTCTGAGCCTCTCTTAGCATTGTCACATCTAAGGATGGATCCTGCTAGCAATTTATCATTTATTGAGGGTAGTCAACTGGTTAAAAAACCAAATGAACTTTCCCTTGGCATAGAAGACTTGGTTATTCCTTGGAATGATCTTGTTTTGAGGGAGAAAATTGGGGCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCTTGGAACCGATGTTGCTGTGAAGGTTCTGATGGAACAAGACCTGCATGCAGAACGTTTTGATGAATTTCTTAGGGAGGTTGCCATAATGAAATGTCTACGACATCCAAACATTGTTCTTCTTATGGGTGCAGTCACGGAGCCTCCAAATTTGTCCATTGTCACGGAATACTTATCAAGAGGTAGCTTGCACAGGCTTTTGCATAGACCTGGGGCAAGAGAGGTCTTAGATGAGAGACGCCGGTTAAACATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAGCGTAACCCTCCAATTGTTCATCGTGATTTGAAATCTCCAAATCTTTTGGTTGATAAGAAGTATACAGTAAAGGTTTGTGATTTTGGGCTTTCACGCTTAAAGGCGCACACATTTCTTTCATCAAAATCAGCTGCTGGGACTCCTGAATGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAATCAGATGTTTATAGCTTCGGTGTGATACTATGGGAGCTTGCTACATTGCAGCAACCATGGGGCAACTTGAACCCAGCGCAGGTTGTGGCAGCTGTAGGCTTTAAAGGCAAAAGACTTGAAATCCCACGCGATTTAAATCCTCGAGTTGCTACTATTATAGACGCTTGCTTTGCCAGTGAGCCCCGGAAACGTCCATCCTTTTATGAAATAATGGAATCTTTGAAGCCATTGATCAAACCTTCTACGCCTCATCAAGTTCGCTCAAACACGTCATTAGTTACTCAATGA 2556 43.11 MEMPGRRSDYSLLSQVPDEEVGTGTSTSFYESLAADGNINKGRTDRVYDWDGSGDHKIITQANRIGNMYSWIGLQRHSSGSSYDDSSLSSDYYAPTLSNPAANEINSLGYIHDDELRMKAVGSGGSSGKSWAQQTEESYQLQLALALRLSSEATCADDLNFMDPMPDERALRSLSSSAEAISHRFWVNGCMSYFEKVPDGFYLIHGMDPYVWSLCTNLQEDGRIPSFESLKTVDSSIGSSIEVVLIDQHSDASLKELQNRVHNISSSCITTKEVADHLAKLVCNHMGGSVSEREDDLVSSWRECSDDLKECLGSIVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIAKGCKYCTRDDASSCLVRFGLDREYLIDLIGKPGCLCEPDSLLNGPSSISICSPLRFPRLKPIESTIDFRSLAKQYFLDSQSLNIVFDEASSGNVVSEKDATSSAYQRPFNRKDVDGKNIVLTGDRDGSSQLLNPKASQPSAQDGKPEQLRLCDTSQYSVQSTPFVEHVVPLNQISLIGSKDSEPLLALSHLRMDPASNLSFIEGSQLVKKPNELSLGIEDLVIPWNDLVLREKIGAGSFGTVYHADWLGTDVAVKVLMEQDLHAERFDEFLREVAIMKCLRHPNIVLLMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPRVATIIDACFASEPRKRPSFYEIMESLKPLIKPSTPHQVRSNTSLVTQ 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43812254 43819826 + Lag0012733.1 Lac1g2241 595812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2241 851 PANTHER SERINE-THREONINE PROTEIN KINASE 142 832 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac1g2241 851 FunFam Serine/threonine-protein kinase CTR1 655 840 - -
Lac1g2241 851 FunFam Serine/threonine-protein kinase isoform 1 567 654 - -
Lac1g2241 851 Pfam Ethylene-responsive protein kinase Le-CTR1 178 384 - -
Lac1g2241 851 SMART serkin_6 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2241 851 MobiDBLite consensus disorder prediction 472 494 - -
Lac1g2241 851 PRINTS Tyrosine kinase catalytic domain signature 691 709 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2241 851 PRINTS Tyrosine kinase catalytic domain signature 650 663 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2241 851 PRINTS Tyrosine kinase catalytic domain signature 801 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2241 851 PRINTS Tyrosine kinase catalytic domain signature 738 748 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2241 851 PRINTS Tyrosine kinase catalytic domain signature 757 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2241 851 ProSitePatterns Protein kinases ATP-binding region signature. 582 603 IPR017441 GO:0005524(InterPro)
Lac1g2241 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2241 851 MobiDBLite consensus disorder prediction 1 25 - -
Lac1g2241 851 ProSiteProfiles Protein kinase domain profile. 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2241 851 SUPERFAMILY Protein kinase-like (PK-like) 560 830 IPR011009 -
Lac1g2241 851 Gene3D Phosphorylase Kinase; domain 1 569 654 - -
Lac1g2241 851 Gene3D Transferase(Phosphotransferase) domain 1 655 844 - -
Lac1g2241 851 CDD STKc_MAP3K-like 582 830 - -
Lac1g2241 851 Pfam Protein tyrosine and serine/threonine kinase 577 830 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2241 Lac-Chr1:43812254 Lac2g0788 Lac-Chr2:6100163 4.90E-173 dispersed
Lac1g2241 Lac-Chr1:43812254 Lac10g2917 Lac-Chr10:43761839 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85908 PF07714 PK_Tyr_Ser-Thr 5.20E-69 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2241 K14510 - csv:101208800 1484.93