Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2249 ATGGGATCTGGTACTTGTGAAATTGTTGAAGCAAGGGAAGAAATCAAACCTGTTCAAAGTAAGGTAGGATCTCGTCATTCAGATTTTGTATCGGACAAAGATCGAAAACTTTCTGCATTGAAAATTGGATTCAAGGGATCTCTAGAGGATGATATCAATCAGCTTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGCTTAGGTCATTCACAAGTAGAGGTAAACGCACTGAGAAAAAGTACACTAAAGAAGCCAATAACTGTTGGCATACCTCGTTCACCAGGTATTGGTACTTCTGATTCTGGTAGTCTGAAGCAAGCACTCAGGGAACTATGCCTTTCAAAGGCATCTGAAATGGCTGCCATGAAAAGATCATCAAAATCAGCTAGCTCTTCAAGACTCTCGGAAGCTGGACGGATCAAGACATTGTACAATTCAGTTATGGTTGAAGCCACAGAGTCAGGCTCTTCTTCAGATAAAGGTAAGGGGGGGCGCGTGGTTGAAATATCCCTGGTTCCAGAGGAAAAGAAATTGAACTTTGAGAAGAGACTTGAGCATGTCCAGGCTTCTGTTGTTAAATCACAGGCTGAAAGTGCTCATTCTTCTCCTCAGTTACCAGTTGTGAAAACACAAAATTCTACAGGGGAACAAAACATCAATACCACTTTGTCAAGGAAAGTTGGATCTCAAACATTAAAGGCAGAGCTGGAGAAGGAAGAGGAGTCCATTACTCCACCATCTATATCTTCTTGCACTATTGGCAAGGTTTTAGAGAAGGAGAAGAAAATTCTTGCCTCAAGCAGGGTAGCAAATAAAGTCTCATCATCGAAGACAGGACGGAAAGGTAGGTTGCAAACTGCATCGTCATCTAAGTTGGGTAGTGGCAATAAGGTAAGCAAGTTATCTAGAAGTAGCTCCCGTTCAGTCAAACCAATTATTAGGAACAAGGGGCTGGCTAAGAAGAAGGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTCAATGGTGATACGGATCCTAGTAAAAGGAAGTTGATATGTGAGAGGTGCCACTGTGCATTGAATAGTGCAACTAAAGACTCAAAGAAGGGCTCTGCATCCCAGTTTAGTGGTCTTGGTACTGATGTAAACATGACTAGTTCAAAATCTGGTGTAAACAAATCAGGCATCAATGCAGATGGCAAGGCTTCTGATGTTAGAGTAAAAAGAAATACAAGGGTACGAGATAAGGGTGAATTTTCACAAAGCTCAAAAAGTAGTCAAGGTGAGTACAGTAGCAGTACGACGAGTATTATAAGTGATGACAGCAATGGGCATGGATCCAGTACTGGTAACAGGCCTCATATGTCGAAAGATGTTAGGTGGGAAGCCATACGCCATGCACAATTGCAGCATGGGGTCCTTAGCTTGCGGCATTTCAATCTTTTAAAGAAGCTTGGTTGTGGGGACATTGGAACCGTGTATCTTGCTGAGCTAACTGGCACTAATTGTCTATTTGCCATTAAGGTAATGGACAATGAGTTTCTAGCAAGGCGAAAGAAAATGCCTAGAGCGCAAACTGAGAGAGAAATACTGAGAATGCTAGATCATCCATTTCTCCCAACACTTTATGTTCAATTCACTTCAGATAATCTATCATGTCTTGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGGCAGAGTTTTTCCTGAACCTGCAGCAAGATTTTATGTTGCTGAGGTCCTCCTTGCTTTGGAATACTTGCACATGCTTGGAGTCATTTATCGAGATTTAAAACCTGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTGTCGCTTAGGTGCACGGTCAGTCCAACACTCCTGAAGTCATCATCCTTCAATGCAGACTTGGTGAAAACGTCAGGTCCATGTACAGATTCTAGTTGTGCTGAGCCGTTTTGCATTGAACCATCATGTCAAGTCCCATGCTTCAGCCCAAGGTTTCTACCTGCTGCTGCCAAAACAAGGAAGTCAAAACCTGACCTCACAACACAGTTCAGATCATTGCCCCAGCTCGTAGCTGAACCCACAGATGCACGATCCAATTCCTTCGTTGGGACTCATGAATATTTGGCTCCCGAGATCATTAAAGGAGAGGGTCATGGAGCTGCAGTTGATTGGTGGACATTTGGTGTTTTTCTCTATGAGCTTCTGTATGGTAGAACTCCTTTCAAGGGTTCCAATAACGAAGAAACATTGGCCAATGTAGTATTGCAGGGCCTCAGTTTTCCCGACAGTCCATTAGTTAGTTTGCAGGCAAGGGATCTTATCCGAGGGTTGTTGGTAAAAGAACCCGAAAACCGATTCGGAACGGAGAAAGGGGCTGCCGAAATCAAACAGCACCCGTTCTTCGAGGGGCTAAACTGGGCATTGATCCGTTGTGCAATCCCTCCAGAACTCCCGGACTTATGTGAAATGGACATTCCAAACATGATTGCTCAACAAAACAAGTTCAGGTATTTGGAAAGCAAGTCCACTGGAGAGCATCTGGAGTTCGAATTGTTTTAG 2595 43.2 MGSGTCEIVEAREEIKPVQSKVGSRHSDFVSDKDRKLSALKIGFKGSLEDDINQLFESISIKNASKSLGHSQVEVNALRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCLSKASEMAAMKRSSKSASSSRLSEAGRIKTLYNSVMVEATESGSSSDKGKGGRVVEISLVPEEKKLNFEKRLEHVQASVVKSQAESAHSSPQLPVVKTQNSTGEQNINTTLSRKVGSQTLKAELEKEEESITPPSISSCTIGKVLEKEKKILASSRVANKVSSSKTGRKGRLQTASSSKLGSGNKVSKLSRSSSRSVKPIIRNKGLAKKKVKQDLSSPTCSSSTYNAVNGDTDPSKRKLICERCHCALNSATKDSKKGSASQFSGLGTDVNMTSSKSGVNKSGINADGKASDVRVKRNTRVRDKGEFSQSSKSSQGEYSSSTTSIISDDSNGHGSSTGNRPHMSKDVRWEAIRHAQLQHGVLSLRHFNLLKKLGCGDIGTVYLAELTGTNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVSPTLLKSSSFNADLVKTSGPCTDSSCAEPFCIEPSCQVPCFSPRFLPAAAKTRKSKPDLTTQFRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQGLSFPDSPLVSLQARDLIRGLLVKEPENRFGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCEMDIPNMIAQQNKFRYLESKSTGEHLEFELF 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43934847 43938348 - Lag0012741.1 Lac1g2249 595820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2249 864 FunFam Serine/threonine-protein kinase D6PK-like 478 563 - -
Lac1g2249 864 CDD STKc_phototropin_like 478 832 - -
Lac1g2249 864 FunFam serine/threonine-protein kinase D6PK-like 708 831 - -
Lac1g2249 864 SUPERFAMILY Protein kinase-like (PK-like) 455 830 IPR011009 -
Lac1g2249 864 MobiDBLite consensus disorder prediction 195 227 - -
Lac1g2249 864 SMART serkin_6 480 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2249 864 Gene3D Phosphorylase Kinase; domain 1 478 559 - -
Lac1g2249 864 MobiDBLite consensus disorder prediction 403 420 - -
Lac1g2249 864 MobiDBLite consensus disorder prediction 366 397 - -
Lac1g2249 864 Gene3D Transferase(Phosphotransferase) domain 1 560 629 - -
Lac1g2249 864 FunFam serine/threonine-protein kinase D6PK-like 564 631 - -
Lac1g2249 864 PANTHER FLIPPASE KINASE 1-RELATED 290 838 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac1g2249 864 Gene3D Transferase(Phosphotransferase) domain 1 706 831 - -
Lac1g2249 864 MobiDBLite consensus disorder prediction 327 344 - -
Lac1g2249 864 MobiDBLite consensus disorder prediction 421 455 - -
Lac1g2249 864 MobiDBLite consensus disorder prediction 269 312 - -
Lac1g2249 864 MobiDBLite consensus disorder prediction 366 456 - -
Lac1g2249 864 ProSiteProfiles Protein kinase domain profile. 480 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2249 864 MobiDBLite consensus disorder prediction 268 345 - -
Lac1g2249 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2249 864 Pfam Protein kinase domain 481 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2249 864 Pfam Protein kinase domain 710 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2249 Lac-Chr1:43934847 Lac1g3129 Lac-Chr1:51633641 5.90E-150 dispersed
Lac9g2843 Lac-Chr9:46427422 Lac1g2249 Lac-Chr1:43934847 8.20E-65 transposed
Lac1g2249 Lac-Chr1:43934847 Lac9g2687 Lac-Chr9:45166135 4.00E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85909 PF00069 Pkinase 5.20E-36 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2249 - - - 0.0