Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2253 ATGTGTAACGAAATGAAACTGCACGAGATTCTACTTGTTTTTGTATTGCTTCTTTGGCTGGTCGCCTCTTTTATGATCCATGGCTCTAACCACCATGAAAGAAAGCCTTACATTGTGTATATGGGCGACCTGCCCGCCGGATCTCCGTCGTCCACGGTGGCGGATGACCACCACAACCTCCTTGTGGACGCCATTGGAGATGAAAAGACAGCTCGAGAGTCCAAAATCCACAGCTATGGAAAGAGCTTCAATGGGTTCGCCGCTAGACTTTTGCCTCACGAAGCCACCAAGCTCTCAAATTACGACGGTGTCGTTTCGGTGTTCCCGAGCAGAAAGCAGAGAGTTCTAACAACGAGATCGTGGGACTTTCTGGGACTGAATCATCGCTCCAAACGCAACCCTAAAATCGAGTCTAATATCATCGTCGCCGTTTTGGATACGGGAATTTGGATAAATAGTCCTAGTTTCAGCGATGAAGGTTACGGTCCACCTCCGCCTAAATGGAAGGGCAAATGCGTCACTGGCCCCAACTTCACCGCCTGCAACAACAAAGTGATCGGTGCGAATTACTTCGATCTGGACAACGGAAGCACATATCCAGAGACCAGCGTCGCCGACACGGAGGGCCATGGCTCTCACACGGCGTCCACTGTCGCAGGCTCGCCGGTGCCCGGGGCCAGCTTGTACGGCATCGCCAAAGGGACGGCTCGCGGCGGCGTCCCTTCCGCTCGAATTGCGGTCTACAAAGTGTGCTGGAGTATTTTCTGCAGCGAAATGGACGTACTTGCAGGCTTCGATGAGGCCATCGCCGACGGCGTCGATTTGATTTCCGTCTCCATAGGCTCGCCGCCGATTGATTTCTTCAGGGACAGTCAGGCCATCGGGGCTTTTCATGCCATGAAGAAGGGCATTTTGACGTCCTGCGCCGCCGGCAACGACGGCCCTGAATTGTCCACCGTCGAGAATGTCGCCCCCTGGATTATGACCGTCGCTGCAACCGCCATTGATAGACGATTCGTCACTGCTTTCAAACTCGGTAATGGCAAGAAATTTACTGGATTCTCCATCAACACTTTTTCGCCCAGGAAACAAATGTACTCTCTTACAAGTGGGGCCAAAGCGTCCTCTGGCACAACCAACCGAGGAAACGCAAGTGCTTGTGATGTTGAAGCTCTAAGCCAAAGCAAGGTGAAGGGAAGGATAGTGTATTGCTTGCAACCTTACACAGATCCCAACATCGAATCCTTAGGAGGCTCTGGAGTCCTTCAACTGCTTGATCAACAAATGGATTATTCCTCCATTTTGCTTCTTCCTGGGGCTGCCATCCCTCCAGTCTTTGGCAAATATATTGATCTTTACATCAACTCCACCAAGAATCCAAAAGCTGTCATTTATAAAAGTAAAACCATCAAAACTGCTGCTCCTTTTGTTGCATCTTTCTCATCCAGAGGGCCTCAGTCTATCAGCCGTAACATCCTCAAGCCTGATCTTGCTGCACCAGGGATAAACATCTTGGCTGCTTACACAAAGTTGGCCAGTTTGACAGGGTCAATGTCAGACAGTAGATATAGTTTATACAGTGTACTGTCAGGTACATCCATGGCTTGTCCTCATGCCACTGCCGCCGCTGCCTATGTTAAGTCATTCCACCCTGACTGGTCTCCAGCCGCGGTCAAGTCTGCTCTCATGACCACCGCGACTCCGATGAAGATCAAGTCCAAGGACGCTGAGTTTGGCTCTGGAGCAGGACAAATAAATCCAACCAAGGCGGTCCATCCCGGCCTTGTCTATGACATTTCGCTCAAGTCGTACATCTCTTTCCTCTGCAAAGAAGGCTACAACAGCACAACAATTGGCTTACTTGTTGGTAGCAAGAAGTATAACTGCTCTAAGATGAAACCTGCACAAGGCACCGATGGACTCAACTACCCTACAATGCACAAACAACTCTTAGATCCTAGTTCTTCCATTGCGGCAGTCTTTTATCGGACAGTGACTCATGTCGGGTACGGTACATCATTGTACAGGGCAAATATATCATCCCCAGATGGCCTCTCTGTCAAAGTTTTTCCAGACACTCTAAATTTTGTTAAGTTACATGAAAGTAAGACATTCAAAGTTGTGGTGAGGGGCAAACCTATGCCAGATGGAATACAGATTCTATCAGCTTTACTTGAATGGAACGACTCTAAACACATAGTTAGAAGCAATATCGTCATCTACAGGCAGTTATTCATGTAA 2241 49.0 MCNEMKLHEILLVFVLLLWLVASFMIHGSNHHERKPYIVYMGDLPAGSPSSTVADDHHNLLVDAIGDEKTARESKIHSYGKSFNGFAARLLPHEATKLSNYDGVVSVFPSRKQRVLTTRSWDFLGLNHRSKRNPKIESNIIVAVLDTGIWINSPSFSDEGYGPPPPKWKGKCVTGPNFTACNNKVIGANYFDLDNGSTYPETSVADTEGHGSHTASTVAGSPVPGASLYGIAKGTARGGVPSARIAVYKVCWSIFCSEMDVLAGFDEAIADGVDLISVSIGSPPIDFFRDSQAIGAFHAMKKGILTSCAAGNDGPELSTVENVAPWIMTVAATAIDRRFVTAFKLGNGKKFTGFSINTFSPRKQMYSLTSGAKASSGTTNRGNASACDVEALSQSKVKGRIVYCLQPYTDPNIESLGGSGVLQLLDQQMDYSSILLLPGAAIPPVFGKYIDLYINSTKNPKAVIYKSKTIKTAAPFVASFSSRGPQSISRNILKPDLAAPGINILAAYTKLASLTGSMSDSRYSLYSVLSGTSMACPHATAAAAYVKSFHPDWSPAAVKSALMTTATPMKIKSKDAEFGSGAGQINPTKAVHPGLVYDISLKSYISFLCKEGYNSTTIGLLVGSKKYNCSKMKPAQGTDGLNYPTMHKQLLDPSSSIAAVFYRTVTHVGYGTSLYRANISSPDGLSVKVFPDTLNFVKLHESKTFKVVVRGKPMPDGIQILSALLEWNDSKHIVRSNIVIYRQLFM 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43976070 43981127 - Lag0012745.1 Lac1g2253 595824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2253 746 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 37 738 IPR045051 -
Lac1g2253 746 Pfam Subtilase family 138 581 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lac1g2253 746 CDD Peptidases_S8_3 117 567 IPR034197 -
Lac1g2253 746 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 142 152 IPR023827 -
Lac1g2253 746 PRINTS Subtilisin serine protease family (S8) signature 137 156 IPR015500 -
Lac1g2253 746 PRINTS Subtilisin serine protease family (S8) signature 530 546 IPR015500 -
Lac1g2253 746 PRINTS Subtilisin serine protease family (S8) signature 206 219 IPR015500 -
Lac1g2253 746 Pfam Peptidase inhibitor I9 37 112 IPR010259 -
Lac1g2253 746 CDD PA_subtilisin_like 343 464 - -
Lac1g2253 746 SUPERFAMILY Subtilisin-like 13 634 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac1g2253 746 Gene3D Peptidase S8/S53 domain 139 604 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac1g2253 746 ProSitePatterns Serine proteases, subtilase family, serine active site. 531 541 IPR023828 -
Lac1g2253 746 ProSiteProfiles Serine proteases, subtilase domain profile. 120 591 - -
Lac1g2253 746 Gene3D - 336 470 - -
Lac1g2253 746 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 115 IPR037045 -
Lac1g2253 746 Gene3D - 608 743 - -
Lac1g2253 746 Pfam Fibronectin type-III domain 641 740 IPR041469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1478 Lac-Chr13:14820927 Lac1g2253 Lac-Chr1:43976070 7.20E-149 dispersed
Lac13g1480 Lac-Chr13:14863282 Lac1g2253 Lac-Chr1:43976070 1.10E-173 dispersed
Lac1g2253 Lac-Chr1:43976070 Lac2g2679 Lac-Chr2:41234342 1.60E-156 dispersed
Lac9g2791 Lac-Chr9:46030222 Lac1g2253 Lac-Chr1:43976070 3.30E-157 transposed
Lac1g2253 Lac-Chr1:43976070 Lac10g2880 Lac-Chr10:43329202 1.60E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2253 - - - 0.0