Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2263 ATGGCGGAGGAGCACAGATGCCAAGCACCTGAAGGTCACCGTCTCTGCGCCAATAATTGCGGCTTCTTCGGCAGTCCAGCCACCATGGATCTCTGCTCCAAATGTTACAGAGACATCCGTCTCAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCAGCCTCATCTCCGTCTCCTCTCACCTCTTCCCCAATCGATCCTCCCCCCGTTTCCCCTGTTGTAGCCTTGTCCTCGCCGGACACAGATCTGACCATCCCGCCCCTTGCGGCGGCCGGATCTGAGGCGTTGAACCAGTCGAGCCCCAACCCTAACCCGAGCCCGAGCCCAAACCGGTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAGATGCAGATGCGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGATTTCAAGTCGATCGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGACAAACTGGAGAGGATTTGA 531 57.63 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDIRLKEQEQASTKSTIEAALSASSPSPLTSSPIDPPPVSPVVALSSPDTDLTIPPLAAAGSEALNQSSPNPNPSPSPNRCSSCRKKVGLTGFRCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 44067844 44068374 + Lag0012755.1 Lac1g2263 595834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2263 176 ProSiteProfiles Zinc finger AN1-type profile. 111 157 IPR000058 GO:0008270(InterPro)
Lac1g2263 176 PANTHER AN1-TYPE ZINC FINGER PROTEIN 11 176 IPR050652 -
Lac1g2263 176 FunFam Zinc finger AN1-type containing 6 94 172 - -
Lac1g2263 176 MobiDBLite consensus disorder prediction 48 65 - -
Lac1g2263 176 SMART AN1_Zf_4 117 154 IPR000058 GO:0008270(InterPro)
Lac1g2263 176 Gene3D - 1 63 - -
Lac1g2263 176 Gene3D - 94 172 IPR035896 -
Lac1g2263 176 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
Lac1g2263 176 MobiDBLite consensus disorder prediction 46 117 - -
Lac1g2263 176 Pfam AN1-like Zinc finger 117 153 IPR000058 GO:0008270(InterPro)
Lac1g2263 176 SUPERFAMILY AN1-like Zinc finger 102 171 IPR035896 -
Lac1g2263 176 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Lac1g2263 176 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Lac1g2263 176 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2263 Lac-Chr1:44067844 Lac9g2709 Lac-Chr9:45353018 4.10E-42 dispersed
Lac1g2263 Lac-Chr1:44067844 Lac11g2189 Lac-Chr11:38017721 1.00E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2263 - - - 0.0