Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2307 ATGCGTGGCGCCTCTCCAGCTCCGAACAGGTCGGAGCCACTGCCGCACTCCCAAACTCCCCAGATCCTGCCGCCTCTCAAGCGCCAGCTTGCTTTCGAGTCCACCAAGCCGCCCTTCGTTCCTCCGGGTAACTATTACCACTTCGGTGGCGGTTCTTCCAATGCTATTGGTCAAGAACATGATGCCATCCTCGTTAAACCTCTCAAACCAAAGCAGAAGGGTGTCATTTACAGCGTGGTGGAATCTAACGACTGCATTCATGATCAGGGATCTTCAAAAGATGCTCTAAGTTATGTACAGACACCTGTGTCGGCAAAAGGGGGCAGGGTGTACAATAAGTCAAAGGCTTCAAGGAGAACTACAGAGCCTCAAACACCCATCTCAGACACTAGCACTTATTCTCCTCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAACACGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGAAGGTGCAGAAGAGGAGAATATATGATATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGAGTCAATGCACAAATTCCAGGAAACGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGTATTGCAGGAAAGACTGAGGAATCTGAGTGAAGATGAAAATATCCAGAAATGGCTCTTCGTGACAGAAGAAGACATTAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATTATCCACAAAGAAGATATAGAATAGTTCTTAGGAGCACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTTGCAGCAGAAGCAATTATTGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCAACTGTCCCAGTACAGCAGCAGCTGTGATGTGAATGGCTCAAATGAGTTTCCGGGTGGAATGATGAAGATTATTCCTTCAGACGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACGGATATGTGGAGAACAGATTCAGATATTGCATGGGATCAGTCAGATATGGTTCCTCATGACTTTGTAATATCTGATATTAGTGCCCAAAGGCCAAGACCAGCAAGCCCACATTCAGAGACTGGCGAAGCGCCATCTGTTGTTAACTTAAGATAA 1407 43.35 MRGASPAPNRSEPLPHSQTPQILPPLKRQLAFESTKPPFVPPGNYYHFGGGSSNAIGQEHDAILVKPLKPKQKGVIYSVVESNDCIHDQGSSKDALSYVQTPVSAKGGRVYNKSKASRRTTEPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKHARDGILDLNKAAETLKVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGVNAQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRVLQERLRNLSEDENIQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLAAEAIIGESSRNEIEPQAQLSQYSSSCDVNGSNEFPGGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFVISDISAQRPRPASPHSETGEAPSVVNLR 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 44479315 44485903 - Lag0012799.1 Lac1g2307 595878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2307 468 MobiDBLite consensus disorder prediction 1 26 - -
Lac1g2307 468 MobiDBLite consensus disorder prediction 117 134 - -
Lac1g2307 468 CDD E2F_DD 224 325 IPR032198 GO:0046983(InterPro)
Lac1g2307 468 SUPERFAMILY E2F-DP heterodimerization region 222 325 IPR037241 -
Lac1g2307 468 PANTHER TRANSCRIPTION FACTOR E2F 92 423 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lac1g2307 468 MobiDBLite consensus disorder prediction 446 468 - -
Lac1g2307 468 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac1g2307 468 FunFam E2F transcription factor 1 137 210 - -
Lac1g2307 468 SUPERFAMILY Winged helix DNA-binding domain 143 206 IPR036390 -
Lac1g2307 468 Gene3D - 137 211 IPR036388 -
Lac1g2307 468 Coils Coil 228 255 - -
Lac1g2307 468 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac1g2307 468 MobiDBLite consensus disorder prediction 109 134 - -
Lac1g2307 468 Gene3D - 215 325 - -
Lac1g2307 468 Pfam E2F transcription factor CC-MB domain 224 324 IPR032198 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0417 Lac-Chr10:3272637 Lac1g2307 Lac-Chr1:44479315 2.20E-09 dispersed
Lac1g2307 Lac-Chr1:44479315 Lac6g0492 Lac-Chr6:4115161 2.00E-59 dispersed
Lac1g2307 Lac-Chr1:44479315 Lac9g2731 Lac-Chr9:45486837 2.90E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23279 PF16421 E2F_CC-MB 4.90E-33 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2307 K06620 - csv:101212480 724.161