Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2307 ATGCGTGGCGCCTCTCCAGCTCCGAACAGGTCGGAGCCACTGCCGCACTCCCAAACTCCCCAGATCCTGCCGCCTCTCAAGCGCCAGCTTGCTTTCGAGTCCACCAAGCCGCCCTTCGTTCCTCCGGGTAACTATTACCACTTCGGTGGCGGTTCTTCCAATGCTATTGGTCAAGAACATGATGCCATCCTCGTTAAACCTCTCAAACCAAAGCAGAAGGGTGTCATTTACAGCGTGGTGGAATCTAACGACTGCATTCATGATCAGGGATCTTCAAAAGATGCTCTAAGTTATGTACAGACACCTGTGTCGGCAAAAGGGGGCAGGGTGTACAATAAGTCAAAGGCTTCAAGGAGAACTACAGAGCCTCAAACACCCATCTCAGACACTAGCACTTATTCTCCTCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAACACGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGAAGGTGCAGAAGAGGAGAATATATGATATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGAGTCAATGCACAAATTCCAGGAAACGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGTATTGCAGGAAAGACTGAGGAATCTGAGTGAAGATGAAAATATCCAGAAATGGCTCTTCGTGACAGAAGAAGACATTAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATTATCCACAAAGAAGATATAGAATAGTTCTTAGGAGCACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTTGCAGCAGAAGCAATTATTGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCAACTGTCCCAGTACAGCAGCAGCTGTGATGTGAATGGCTCAAATGAGTTTCCGGGTGGAATGATGAAGATTATTCCTTCAGACGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACGGATATGTGGAGAACAGATTCAGATATTGCATGGGATCAGTCAGATATGGTTCCTCATGACTTTGTAATATCTGATATTAGTGCCCAAAGGCCAAGACCAGCAAGCCCACATTCAGAGACTGGCGAAGCGCCATCTGTTGTTAACTTAAGATAA 1407 43.35 MRGASPAPNRSEPLPHSQTPQILPPLKRQLAFESTKPPFVPPGNYYHFGGGSSNAIGQEHDAILVKPLKPKQKGVIYSVVESNDCIHDQGSSKDALSYVQTPVSAKGGRVYNKSKASRRTTEPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKHARDGILDLNKAAETLKVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGVNAQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRVLQERLRNLSEDENIQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLAAEAIIGESSRNEIEPQAQLSQYSSSCDVNGSNEFPGGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFVISDISAQRPRPASPHSETGEAPSVVNLR 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 44479315 44485903 - Lag0012799.1 Lac1g2307 595878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2307 468 MobiDBLite consensus disorder prediction 1 26 - -
Lac1g2307 468 MobiDBLite consensus disorder prediction 117 134 - -
Lac1g2307 468 CDD E2F_DD 224 325 IPR032198 GO:0046983(InterPro)
Lac1g2307 468 SUPERFAMILY E2F-DP heterodimerization region 222 325 IPR037241 -
Lac1g2307 468 PANTHER TRANSCRIPTION FACTOR E2F 92 423 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lac1g2307 468 MobiDBLite consensus disorder prediction 446 468 - -
Lac1g2307 468 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac1g2307 468 FunFam E2F transcription factor 1 137 210 - -
Lac1g2307 468 SUPERFAMILY Winged helix DNA-binding domain 143 206 IPR036390 -
Lac1g2307 468 Gene3D - 137 211 IPR036388 -
Lac1g2307 468 Coils Coil 228 255 - -
Lac1g2307 468 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac1g2307 468 MobiDBLite consensus disorder prediction 109 134 - -
Lac1g2307 468 Gene3D - 215 325 - -
Lac1g2307 468 Pfam E2F transcription factor CC-MB domain 224 324 IPR032198 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2307 K06620 - - csv:101212480 724.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0417 Lac-Chr10:3272637 Lac1g2307 Lac-Chr1:44479315 2.20E-09 dispersed
Lac1g2307 Lac-Chr1:44479315 Lac6g0492 Lac-Chr6:4115161 2.00E-59 dispersed
Lac1g2307 Lac-Chr1:44479315 Lac9g2731 Lac-Chr9:45486837 2.90E-119 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0417 . 3 369 E2F-DP Transcription Factor Family AT3G48160 56.1 3.0e-104 376.3
Lac5g2716 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 1.6e-59 227.3
Lac1g2307 . 11 449 E2F-DP Transcription Factor Family AT2G36010 55.7 2.5e-121 433.3
Lac9g2731 . 17 393 E2F-DP Transcription Factor Family AT2G36010 58.1 2.0e-110 397.1
Lac9g2731 . 12 398 E2F-DP Transcription Factor Family AT5G22220 58.2 1.6e-106 384.0
Lac6g0492 . 151 405 E2F-DP Transcription Factor Family AT1G47870 55.3 2.6e-68 256.9
Lac9g2731 . 91 367 E2F-DP Transcription Factor Family AT1G47870 51.3 5.6e-63 239.2
Lac5g2716 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 1.6e-59 227.3
Lac9g2731 . 12 398 E2F-DP Transcription Factor Family AT5G22220 58.2 1.6e-106 384.0
Lac1g2307 . 11 449 E2F-DP Transcription Factor Family AT2G36010 55.7 2.5e-121 433.3
Lac9g2731 . 17 393 E2F-DP Transcription Factor Family AT2G36010 58.1 2.0e-110 397.1
Lac6g0492 . 151 405 E2F-DP Transcription Factor Family AT1G47870 55.3 2.6e-68 256.9
Lac9g2731 . 91 367 E2F-DP Transcription Factor Family AT1G47870 51.3 5.6e-63 239.2
Lac10g0417 . 3 369 E2F-DP Transcription Factor Family AT3G48160 56.1 3.0e-104 376.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23279 PF16421 E2F_CC-MB 4.90E-33 No_clan Lac TF