Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2316 ATGGGGGTTCCACAGACGATGGAAATCCTGAGCGAGAGAGCCACACTTGTCAGAGAGTCGCTGCAGAAGAGCCAGAATGTCACCGAGAGCATGGTCTCCATTCTTGGCTCCTTCGACTCCCGTCTCTCCGCCCTCGAAACCGCAATGCGGCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGACTGCAGAAAGTATGCTAGCTCAGTTTGATCTTACACGCAAGGCCGAGGCTAAAATACTCAGGGGGCCACATGAGGACTTAGAAATGTACTTGGAAGCAATCGATCAACTACGAAGTACAAATCGCTTCTTTACTGGGAACAAAAATTTCAAAAGTAACGATACTATTCTTATCCATACAAGCAACTTGCTTGTTAAAGCCATTTCAAAACTGGAAGATGAGTTCAGACAGCTTTTAACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTTTTCGATTGCCTCCCCAACTCTTTGCGTCCATCATCAGCCTCTGCGCAGCAAGGTGATAGTGGTAGCAAAACTAATTCTGACCATCACAACAAAAGCTTAGAAGCTGCCATCTTCATTCCCCCAACTCTTATTCCTCCCAGGGTTCTTCCGTTGTTGCATGATTTGGCCCAACAAATGATTCTGGCTGGCCATCAGCAGCAACTGTTTAGAATATACAGGGATACTCGCGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTTGAGAGGCTGAGCAAGGATGACGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAACTGCTGTTTGCTGGGGAAAGGAAAATCTGTGATCAAATATTTGATGGTGCAGACTCTCTCCAGGATCAATGCTTCGCAGATGTGACTGCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCAATTGCCAAAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTATGAAATAATGCGAGAACTGCAATCTGAGATTGAAACACTTTTTGGAAGTAAAACATGCATTGAAATGCGGGATTCTGCATTGAGCTTAACAAGACGTCTTGCTGAGACAGCTCAAGAGACTTTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACTGCTGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAACTACGTCAAGTTTTTATTTGACTACCAATCTACTTTGAAGCAACTATTTCTAGACTTTGAGGCTGGTGATCCAGATGCTCAGTTAGCAATAGTAACTACAAGAATTATGCAGGCCCTTCAGACTAATCTTGATGGAAAATCTAAGCAATATAGGGATCCTGCATTAACTCAGTTATTTCTGATGAACAATATTCACTATATAGTGAGATCTGTCCGAAGATCAGAGGCAAAAGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGAATTGTGCAACAGCATGCAAATCAATATAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACTGTTCAGGCCTCAGGTAGTGGTGGTGCTTCGGGAGATGCTAGCAGTGGACTCTCAAGAGCTATGGTGAAAGATAGGTTTAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAATGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTGAGGTTGGCAGTTGCTGAAGTTTTATTGCCTGCCTACCGATCCTTCATCAAGCGTTCCGGGCATGTTCTCATTACTGAACTTTAA 1824 43.2 MGVPQTMEILSERATLVRESLQKSQNVTESMVSILGSFDSRLSALETAMRPTQIRTHSIRRAHENIDKTLKTAESMLAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRFFTGNKNFKSNDTILIHTSNLLVKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSASAQQGDSGSKTNSDHHNKSLEAAIFIPPTLIPPRVLPLLHDLAQQMILAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTANSVSVLLSFGEAIAKSKRSPEKLFVLLDMYEIMRELQSEIETLFGSKTCIEMRDSALSLTRRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFLDFEAGDPDAQLAIVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQASGSGGASGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRSGHVLITEL 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 44527486 44535674 - Lag0012808.1 Lac1g2316 595887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2316 607 Pfam Exo70 exocyst complex subunit C-terminal 273 600 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lac1g2316 607 Gene3D Exocyst complex component Exo70 75 605 - -
Lac1g2316 607 SUPERFAMILY Cullin repeat-like 76 600 IPR016159 -
Lac1g2316 607 MobiDBLite consensus disorder prediction 168 189 - -
Lac1g2316 607 Pfam Exocyst complex component Exo70 N-terminal 69 151 - -
Lac1g2316 607 PANTHER EXOCYST COMPLEX PROTEIN EXO70 12 601 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Lac1g2316 607 MobiDBLite consensus disorder prediction 169 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2316 K07195 - - csv:105436018 1102.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0596 Lac-Chr13:4412545 Lac1g2316 Lac-Chr1:44527486 1.60E-256 dispersed
Lac1g2316 Lac-Chr1:44527486 Lac7g2884 Lac-Chr7:47942878 4.10E-89 dispersed
Lac1g2316 Lac-Chr1:44527486 Lac3g0086 Lac-Chr3:577593 8.20E-90 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g0596 . 10 653 EXO70 exocyst subunit family AT5G03540 76.6 1.4e-284 976.1
Lac1g2316 . 1 600 EXO70 exocyst subunit family AT5G03540 71.6 4.2e-249 858.2
Lac1g2316 . 1 603 EXO70 exocyst subunit family AT5G52340 78.6 5.2e-273 937.6
Lac13g0596 . 12 653 EXO70 exocyst subunit family AT5G52340 74.0 1.3e-271 932.9
Lac13g0596 . 147 653 EXO70 exocyst subunit family AT5G52350 58.7 4.9e-164 575.5
Lac1g2316 . 145 603 EXO70 exocyst subunit family AT5G52350 61.7 1.7e-156 550.4
Lac7g2884 . 1 624 EXO70 exocyst subunit family AT5G58430 67.1 2.0e-245 845.9
Lac7g2884 . 1 623 EXO70 exocyst subunit family AT1G07000 51.2 3.8e-172 602.4
Lac7g1288 . 55 668 EXO70 exocyst subunit family AT5G13150 53.1 1.2e-174 610.9
Lac8g1970 . 102 715 EXO70 exocyst subunit family AT5G13990 53.8 3.3e-188 656.0
Lac12g2533 . 106 706 EXO70 exocyst subunit family AT1G72470 65.2 8.2e-218 754.2
Lac12g2533 . 106 704 EXO70 exocyst subunit family AT1G54090 63.3 2.1e-213 739.6
Lac12g2533 . 106 705 EXO70 exocyst subunit family AT3G14090 65.3 6.4e-223 771.2
Lac10g0582 . 19 657 EXO70 exocyst subunit family AT5G50380 64.2 7.0e-231 797.7
Lac3g0086 . 13 650 EXO70 exocyst subunit family AT5G50380 62.6 3.3e-228 788.9
Lac6g1170 . 15 682 EXO70 exocyst subunit family AT4G31540 73.7 4.5e-294 1007.7
Lac13g0853 . 59 609 EXO70 exocyst subunit family AT3G55150 50.8 2.3e-151 533.5
Lac7g2632 . 1 172 EXO70 exocyst subunit family AT3G55150 52.3 1.6e-43 175.3
Lac13g0853 . 24 606 EXO70 exocyst subunit family AT2G39380 51.1 9.0e-156 548.1
Lac10g3074 . 25 632 EXO70 exocyst subunit family AT3G09520 54.9 2.0e-179 626.7
Lac9g2512 . 12 600 EXO70 exocyst subunit family AT5G59730 50.2 1.4e-156 550.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74